LOC110500900 (LOC106561773)


Basic Information

Item Value
gene id LOC110500900
gene name LOC106561773
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 99600785 ~ 99615331 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960779.1
aggacgaggaagggagagagggaggaggaaaggatgagagagggagagagaatgagagggggaaagaggtggGACCGAGACAGGGAGGACGGTGAGGTCTGCAGAGTGCAGGAGCAAACATCCAGCCGCCAgcggaaggaggagaggatgagaaagggagatagagaaGACAATGATAGAGCGGAAGTTGAGGTCTTCTCTATAGGGAACTGTAACACCCCTGAGGACAGTAAGATCTCAGTGTGTATCTCACAGTCCCCACAAAGGGCCCCCTATAAGGGAAGTGGAGGGGGAAGGGATTGGACATGTGAAGCCCCTCAAAGGGCCCATAAGGAGGTGAAGAggcaggggaagggaggaggacggggaGGAAGGAGTGAGAGGGGAGGTGTAAAGAGTGGGAGGGAAGTAGGAAGGGTCGTGAGGGAGACTGACAGGCAGGAATACACTGGCCACATAGTGTCTGAGATGAAGGTATAcatgagtagcagcagcagctcaGAGACACAGGACTGCAGAGAGGCTGCCGTCAGGCCCAGACCACCAAGGCCCAGGCCCAGGCCTAGATCCGGGCCCAGCCCCAGCACCCCACACCCTCACCAGACACAATCCCACACTCAGCAGGCCAAGGCCCGCCCGAAACAAGCCCACCAGACCCACACCTACTTGACAGAGGTTCATACCCTCCCAAAACAGGCCTACCAGACCCACACCTACCTGACAGAGGTCGATCCCCTCCCAAAACAGGTCCAGAACCACCAGCTACAGGCCCAGAGCGACGTCCGACAACACCAGCAGACACAGAACTGTAGAGAAAGTGCTATCAGGCCTACACACAGATCTAGCCCCAACACACCACACCCTCAACCCCCCCAGACCCCGGCCCAAATGCAGCACATCCAGGCCCACCAAATCCAAGCCCAGTATAGACAGGCCCCGCCGACACAGGCCCAGATGCATAAGAGACAAGCACCCACCCACCCGACACATGCCCAGACCAACAAGAGACaagcacccacccacccaacacaGGCCCAGACCAAGCAGCACCACAAAGAGAGTCCCGTCAGTCCCAGCCACAGCCCTAGGCCCACCTCTGACAGCCCTAGGCCCATCTCTGATAGCCCTAGGCCCATCTCTGACAGCCCTTGGCCCATCTCTGACAGCCCTAGGCCCATCTCTAACAGCCCTAGGCCCATCTCTGACAGCCCTAGGCCCACCTCTGACAGTCCTAGGCCCATCTCTGACAGCCCTAGGCCCATCTCTGACAGCCCTAGGCCCACCTCTGACAGCCCTAGGCCCATCTCTGATAGCCCTAGGCCCATCTCTGACAGCCCTTGGCCCACCTCTGACAGTCCTAGGCCCATCTCTGACAGCCCTAGGCCCACCTCTGACAACCCTAGGCCCACCTCTGACAACCCTAGGCCCACCTCTGACAACCCTAGGCCCATCTCTGACAGCCCTAGGCCCATCTTTGACAGCCCTAGGCCCACCTCTGACAGTCCTAGGCCAATCTCTGACAGCCCTAGGCCCACCTCTGACAACCCTAGGCCCACCTCTGACAACCCTAGGCCCACCTCTGACAACCCTAGGCCCATCTCTGACAGCCCTAGGCCCATCTTTGACAGCCCTAGGCCCACCTCTGACAGCCCTAGGCCCACCTCTGACAGCCCTAGGCCCACCTCTGTCAGCCCTAGGCCCATCTCTGACAGCCCTAGGCCCATCTCTGACAGCCCTAGGCCCATCTCTGACAGCCCTAGGCCCATATTTGACAGCCCTAGGCCCACCTCTGACAGCCCTAGGCCCACCTCTGACAGCCCTAGGCCCACCTCTGACAGCCCTAGGCCCATCTCTGACAGTCCTAGGCCCACGTCTGACAGCCCTAGGCCCATCTCTGACAGCCCTGGGCCCACCTCTGACAGCCCTAGGCCCACCTCTGACAGTCCTAGGCCCATCTCTGACAGCCCTGGGCCCACCTCTGACAGCCCTAGGCCCACCTCTGACAGCCCTAGACCCACCTCTGACAGCCCTAGACCTGCCCCACCTCCCAGCCACAATGCCCAGACACAGGAACACACTCCCAACACCCAACAGACCGAGCAGCATTGCAGAGAGACCACCACCAGTTTGAGCGCCAAGcctccgtctcctctcctccaggagagCCACCAGACCCAGACCTATCAGCCTCGCAGAGACAgcaccaccagccccagtccaaGGCCCACTTCTGACTCCTCATCCATCCTGGACAAACATCCCAGGGCTGTAAAACTATCAACATCACCAGGTCCACCAGCTTCACACCACAACACAGAGCCACAGAGGGAGTACCCCGAGGAGAGACAGAcacggacacagacacacaaacagATGCCCCACAACATCTCAGAGCAGTGGCCTGGCACGCCCCACTGTCCAGAGCCCCGGGCCCTACAGGAGGACAGTAACAACACACCTCGGCCTGAACCAACACAGAACAACGCCTCGTTCCCCAGCTTCGTGGATGTCCCAGGTCCGTGTGAGCCCGAGGACCTGATTGATGGCATCATCTTTGCTGCTAACTACCTGGGTTCCACCCAGCTGCTGTCTAACAAGAACCCATCTAAAGGAACACGCATGGCCCAGGCGCAGGAGGCTGTCAGCCAGGTCAAGAGCCAAGATGGAGACTCTCAGACGGTGACAGAAGTGGACCTCTTCATCTCCACCAAGGCTGTCAAAGTGCTGAATGCCGACTCACAgGAGACGCTGATGGACAGTGCATTGCGTTCCATATCCTACATCGCAGACATCGGGAGCATCGTGGTTCTGATGGCTCGGACCCGTATGGCAGACACATCCTCGCAGGACTGTAGTGAAGCTGATCTCTCCTGCTCAGAGGGACCGAGACGGTACAGAATGATCTGCTATGTCTTCGAGTCAGAGGACgcCCAGCTCATTGCCCAGTCCATCGGCCAGGCGTTCAGCGTTGCCTACAGGGAGTTCCTCCGTGCCAACGGGATCAACCCTAAGGACCTGAGTCAGAAACAATACAGTGACATCATCAATTCCCAGGAAATGTACAATGACGACCTGGTCCATTTCTCAAACTCTGACAACtgtaaagagCTGGAGTTGGAGAAGCAGAAGGGAGAGAGCCTAGGTGTGGTGATAGTGGAGTCTGGCTGGGGCTCCATCCTGCCAACAGTTATACTAGCTAACATGTTGAACAGCGGCCCGGCTGCCCGCTCTGGGAAACTCAGCGTCGGGGACCAGATCATGTCCATTAACAACACCAGCCTGGTGGGCCTGCCGTTAGCTACCTGCCAAGGCATCATCAAGGGTCTGAAGAGCCAGGTGCAGGTGAAGCTGAGCATCGTGAGTTGTCCTCCTGTCACCACCGTCCTCATCAAGAGACCTGACCTCAAGTTCCAGCTGGGCTTCAGTGTTCAGAACGGCATCatCTGCAGTCTGATGCGTGGAGGTATCGCGGAGCGAGGAGGGGTGCGAGTCGGCCACAGGATCATTGAGATCAATGGGCAGAGTGTGGTTGCCATGCCGCATGAGAAGATAGTCCAGACCCTGTCTGTGTCAGTGGGAGAGatCAACATGAAGACCATGCCTGCAGTGATGTTCAGACTGTTAACAGGGCAGGAGATTCCCGTCTACATTTAGACTCTCCATGTCAGAGTtctaaattgcaccctattccctatgtagtgcactactttagaccaggacccatagggttccggtcaaaagtagtgcacaatgtagggaatagggtgcaatttattACGCACGCCTTATCTGCATCTCTTTCTGTGTACTCGCTCACTGCTTCTGCATGTCTAGGAGAAGTTGAACAGACGGGGTGGTCGACAGGCAGTGGAGCCATtaaaatgagcctgtcctccgATTTACAGTGACACCAGCCCCCACTGGTGCCAGGGTGATACAGTGGGAACATGTATTTTCCTGTTACTCGACTGACAGGGATTACCCCATTCTCAACTTAAGGCTTCTGTCAAATATATCGAAGAGCTACACAGTCATAATGGCTTGAAATGTACATAacataagctgtgtgtgtgtgtgtgtgtatgtttgtgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtagtgtgtgtgttgtgtgtgtgtgtgtgtgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtactgtacatgcAAGGTCTTTAACGTTTTCTTATGACGAGAGATTCCAAACACAGCACATTTTATTTTCAATGTATTccttcttttttattttatttttcttttaTAACATGCAAGATTATGAGCTGTAGTTGTCCTGTAAATAATTTGTCGGTCTGTCATTATTGTTCATTATAACCTGGGTGGTTTGAGACCTGGGTGGTTTGAGACCTGGGTGGTTTGAGACTTG

Function

NR:

description
PREDICTED: amyloid beta A4 precursor protein-binding family A member 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960779.1 True 4496 mRNA 0.55 10 99600785 99615331

Neighbor

gene id symbol gene type direction distance location
duox LOC106584698 coding downstream 17899 99543789 ~ 99582886 (-)
tjp1b tjp1 coding downstream 97330 99221850 ~ 99503455 (-)
galk2 galk2 coding downstream 434433 99154259 ~ 99166352 (-)
LOC110500795 LOC106561757 coding downstream 587408 98997411 ~ 99013377 (-)
ctdspl2a LOC106561755 coding downstream 604611 98974844 ~ 98996174 (-)
LOC118936886 NA coding upstream 501 99615676 ~ 99619142 (-)
LOC110502568 LOC106561766 coding upstream 81888 99697219 ~ 99725327 (-)
LOC110502573 LOC106561753 coding upstream 110900 99726157 ~ 99754890 (-)
LOC110500962 LOC106561782 coding upstream 488221 100103552 ~ 100113945 (-)
spi1a LOC106592577 coding upstream 499498 100114829 ~ 100126246 (-)
G211316 NA non-coding downstream 1242 99599194 ~ 99599543 (-)
G211314 NA non-coding downstream 2102 99598355 ~ 99598683 (-)
G211313 NA non-coding downstream 3193 99597101 ~ 99597592 (-)
G211309 NA non-coding downstream 10177 99590409 ~ 99590608 (-)
G211307 NA non-coding downstream 12359 99588154 ~ 99588426 (-)
G211328 NA non-coding upstream 21400 99636731 ~ 99636981 (-)
G211360 NA non-coding upstream 101742 99717073 ~ 99717405 (-)
G211383 NA non-coding upstream 191331 99806662 ~ 99808053 (-)
G211127 NA other downstream 477127 99123233 ~ 99123658 (-)
G210765 NA other downstream 574667 99025732 ~ 99026118 (-)
LOC118943885 LOC106561728 other downstream 654716 98914015 ~ 98946069 (-)
LOC118943882 LOC106561728 other downstream 656988 98936783 ~ 98944041 (-)
LOC118936884 NA other downstream 1455268 98127948 ~ 98145517 (-)
G211402 NA other upstream 240982 99856313 ~ 99857855 (-)
G211447 myo5c other upstream 344226 99959557 ~ 99963474 (-)
G211630 LOC106584747 other upstream 457916 100073247 ~ 100073797 (-)

Expression


Co-expression Network