LOC118936886


Basic Information

Item Value
gene id LOC118936886
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 99615676 ~ 99619142 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934513.1
GCCTGCCTGGGGTATTCCTTACACATGTTCCAGGGCTGCTTGCCCCTTTCTCTTTTCTTCTAAATTCACCAGATTCCCGTTTTTTTTTTTCTAAGGCAAATCTCTGATCCGGACACAGGCAAGAATTTAAAAAGTAGCGAAGATCCTGATCATCAGTCAATGCTGGACTGAGGATAGTGTGGTGGGGGATTTGATGGGCCAGCCTGAGCCATGGCTCAtgggaggaagtcagagaagaTCACCAGAATCCTGGGGCCCAGCCCTCCATCCTGCCCTGGCCATGCTGGATTCATAGAGAAAAAGCCAGGGACTATTAGGAGAATATTGGCCACCAGCCCTCCACCCTGCCCTGGACCCACAGGATCCACAGAAGAGTCTAATGAAGGACCTCATAATGAAGGACCTCAGAAAGAAAGACCACAGAGTTTGAGGAGTAAGGGCCCTCCGCCCTGCCTTGGCCCCTTATCCACAGGGGAGCCTACTAATGAAGGACTGATGAGCCTACTGATGAGTCTGAGCAGCAAAGGCCCAACTGAAGGACCTCATAATGGGCCTCGGAGTCTGAAGAGTGAGGACCATCCTCAGCACTCTCAGAGCACCAGCATTGAGGAGCTGGACAATAACAATGACGAGAGGACCCCTGGCCCTGCAgcacctgtccctgtccctgctagTGCAACACAGGCCCACCCAAACCAAGCCTACAGCCACCTGACTCAGGCCCAGAACTACCCTCAGCAGCCAGATGCCCAGTCCCATCCCCGACatccccagcagcattgcagagAGAGTCCAAACAGCCCCAGCACCAGGCCCACCTCTGACTCCCCATCCAGTCAGGAGAGCAAGCCCAGGACTGTTAAACCACCACCTGTCCTTACCAGTGCCAATCCTAACCAGCCGTGTCTGATTAGTCCCTCCGGTTCACCTCTTCCTGTCCCTGCTACAGCTAGTGTCTCCTCTGAGCCCCCGCTGAACCAGCCCGGTGACACCATTATCCCTGACAGCatggatgaggaggaagaggaggaggaggaggacagctgCTCAGAGTATGACAACGTGGGTTCGGACGCGGAGGGTGTGGAGCAAGACATTGATCAGGTACTACAGGTGGAAGACCAGAGTATGCAGGTGAGGTACTACAAACACTATCCTGAGCCTCAGGATGGAAGTTATGTAGAGACTGAGGATGGCATCTATGTGGAACACCAAGACAGAACCTACGCGGAACACCAAGACAGAACCTACGTGCAACACCAAGACAGAACCTACGTGGAATGTGAAGACAGAACCTACGTGGAACACCAAGACAGAACCTACGTGGAATGTGAAGACAGAACCTACGTGGAACACCAAGACAGAACCTACGCGGAACACCAAGACAGAACCTACGCGGAACACCAAGACAGAACCTACGCGGAACACCAAGACAGAACCTACGTGGAACACCAAGACAGGACCTACGTGGAACACCAAGACAGAACCTACGTGGAATGTGAAGACAGAACTTACATAGAACACGAAGACGGAACCTACGTGGAATGTGAGGATGGTACCTATTGCCCCAAGGATGACTCCTATGTGGAGGGTAGTGTGGAGGGGAACAGCCTGGAGGGGGATGGGAGCAGCACTGGACAATGCAAACACACCAGGTCACTGTACGGACCTGAGTCTGAGGAAATGGTTATGTATAATGAAAGACTAGAGACACATACAAATCCCTGTATCTCATCTGAGCATCAGTTCAGTGACAATCCATGTCATGCCTCCAAGgctggagatgaggaggagaaagggaatgtggaggtgcaggaggaggaggtggaggggcaggAGGAAGTGGAGGGGCAGAAGGGGCAGGAGGAGGGGCAGAAGTTGCAGGAGCAGGTGGAGGggcaggaggaggtggaggggcagaagggggaggaggaggtggaggggcagAAGGGGCAGGAGGATGTGAAGGggcagaagggggaggaggagaggaagAGCGGGATGTGA
>TU239562
gAAGGggcaggaggaggtggaagggcAGAAAGAGAAGAATTTCCCAGATGAgatgggggaaacagaggaagAGCGGGATGTGACCACATACACAGAGGAGGATTCTgaggagacagaggacagagagcaggagaaaacACCCAGCAGCCACCAGGAGAAAtatggggagaggatgagagagggagagaggcaggaggagaggatgagagagagagggggggagaggatgcgagagggag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934513.1 False 2007 mRNA 0.54 3 99615832 99619142
TU239562 True 239 TUCP 0.56 1 99615676 99615914

Neighbor

gene id symbol gene type direction distance location
LOC110500900 LOC106561773 coding downstream 501 99600785 ~ 99615331 (-)
duox LOC106584698 coding downstream 32946 99543789 ~ 99582886 (-)
tjp1b tjp1 coding downstream 112377 99221850 ~ 99503455 (-)
galk2 galk2 coding downstream 449480 99154259 ~ 99166352 (-)
LOC110500795 LOC106561757 coding downstream 602455 98997411 ~ 99013377 (-)
LOC110502568 LOC106561766 coding upstream 78077 99697219 ~ 99725327 (-)
LOC110502573 LOC106561753 coding upstream 107089 99726157 ~ 99754890 (-)
LOC110500962 LOC106561782 coding upstream 484410 100103552 ~ 100113945 (-)
spi1a LOC106592577 coding upstream 495687 100114829 ~ 100126246 (-)
LOC110500995 LOC106561801 coding upstream 540791 100155072 ~ 100161971 (-)
G211316 NA non-coding downstream 16289 99599194 ~ 99599543 (-)
G211314 NA non-coding downstream 17149 99598355 ~ 99598683 (-)
G211313 NA non-coding downstream 18240 99597101 ~ 99597592 (-)
G211309 NA non-coding downstream 25224 99590409 ~ 99590608 (-)
G211307 NA non-coding downstream 27406 99588154 ~ 99588426 (-)
G211328 NA non-coding upstream 17589 99636731 ~ 99636981 (-)
G211360 NA non-coding upstream 97931 99717073 ~ 99717405 (-)
G211383 NA non-coding upstream 187520 99806662 ~ 99808053 (-)
G211127 NA other downstream 492174 99123233 ~ 99123658 (-)
G210765 NA other downstream 589714 99025732 ~ 99026118 (-)
LOC118943885 LOC106561728 other downstream 669763 98914015 ~ 98946069 (-)
LOC118943882 LOC106561728 other downstream 672035 98936783 ~ 98944041 (-)
LOC118936884 NA other downstream 1470315 98127948 ~ 98145517 (-)
G211402 NA other upstream 237171 99856313 ~ 99857855 (-)
G211447 myo5c other upstream 340415 99959557 ~ 99963474 (-)
G211630 LOC106584747 other upstream 454105 100073247 ~ 100073797 (-)
G211633 NA other upstream 457541 100076683 ~ 100077772 (-)

Expression


Co-expression Network