LOC118943910


Basic Information

Item Value
gene id LOC118943910
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 99884154 ~ 99891769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039265.1
TGGCTCTTCAAGTCACCTCAGTTCATCGTATCATTGTTTACATTGGACTAATTGCGTTGTTAATGTGTGAGTCCATTTTAAATGCTGACTAGAATGGCAACAACCTAacttattttttgttattttagtGGAGGCGATTGTTAAGAGGAATTTTGTTCctatgtgttcattaaccaatgCGATTAATACATTCTGtctgtttctaagaatttgtaaggttcTAATTTAAATGAAACGGACAGAGATCAGTCAACTTCTTGAagactgggaaaagcaatgtAGGTTGGATCTCGTCACTACCTCTGTCGTGTACCAGTTCACCACTGGCCTGAAATAAACCCTCAATTCAGAGGTCAGGTCTTTGCCTTACGGATCCTGGATCCACCCGTGCACGGTTTTCAGCGGTTCCTCGGGACGACAGAGGTATCGAAGGACCAATTGATAAGATAGTTATGTTCTCCAGGTACCCAATTTAATTATATTACTCTCAGTCTGCAAACCATAATTTGTAAGatcctggtcgaatgaaacagacggaggcccagctaaaaCAGTCAAAAAAGGTTTATTAACGGGAACATTCTAAAGTCAAGAATACGAAtcaattcattttatactgacttctcacgcccacacattcacacagccatacacacacacacacacacacacaaacagacgcacatacacacatacccacacacacacgcacacaaacagaagcacacacatgtcctgctacgcacacactgtctcaccacccagccgacagagataatGACCTTGTCCTTGAGATGTACACCCtgttctctcccaaatctctagtcaggtcggcaccaagctcagacagtctgtgtttataATACCATAAAGACATATTGTTTCACCCTGATTCTGActaggactacacatttattgattatgatttcatacattctaatcaattccatacaattatatgtttcagggcggaacattctaatcattcaattaacagacaattCTCACCTATCAGTGATGAAGAAGGTGGAAGAGATCAAACAGAAACAACAGGCAAAGTTTATCATGAACCGGCTGAAGAAGGGCAAACAGTTGGAGAAGGAAGAGGCCATAAGCGAAGTGAAGAAGAATATTCACCTCATCAAAGCACCTCATGCAGGCCAAGCCAAACAGCTGGAAGAGAAGATGTGGAAATGGGTAATGATTAACGTGTTGCTTTCGATGTGGTTGGTTTCAACAACTCATATTTCTGTTTGCTGTGTTTGAAATGTAACTGTTCCAAAGACAAGTGGTGTCAGTCTTCAAAGCATACTGTGTATAATACAGAGGACATGTGTTTTTAAAGACATTGGATACATAAAAGGAATTGATGTATCCTGCCAAGTGAAATAGGTTTCGGATGTTCTTATACATTCCATCTTATGCATTCCATCTTATGCATTCCAGCTTATACATTCCATCTTATGCATTCCGTCTTATGCATTCCGTCTTATACATTCTTATACATTCTTATACATTCATCTTGGATATGACCAAAACCTGTAGTTTTtccatttaggccaaaaagttaaTGTTTTTGCTGTGTTatcttgcagtattacttaacagTCTCGTTGCAAACCAAATGGATGGTTTGGAGTGGATTTTTTTAAAAcacatgcttccttcttttctctTTGTCATAAAGGCCAGCAATGTGAAGtgaatacaatgttgttgatcccttTGTATTTTtaaagtattgtggtggcagcatcatgttatgggtag

Function

NR:

description
PREDICTED: probable ribosome biogenesis protein RLP24

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039265.1 True 1770 mRNA 0.39 3 99884154 99891769

Neighbor

gene id symbol gene type direction distance location
LOC110502588 LOC106584738 coding upstream 6940 99835618 ~ 99877214 (+)
LOC110502581 LOC106561777 coding upstream 65360 99777695 ~ 99818794 (+)
LOC110502564 LOC106584732 coding upstream 205655 99636736 ~ 99678499 (+)
duox2 LOC106561732 coding upstream 286546 99581865 ~ 99597608 (+)
LOC110500866 cep152 coding upstream 673214 99207967 ~ 99210940 (+)
LOC110500919 LOC106584740 coding downstream 5453 99896619 ~ 99899881 (+)
LOC110500932 LOC106561787 coding downstream 13871 99905640 ~ 99951756 (+)
LOC110502593 myo5c coding downstream 61494 99953263 ~ 100008473 (+)
LOC110500941 LOC106561786 coding downstream 119984 100011753 ~ 100027473 (+)
LOC110500952 LOC106561785 coding downstream 146430 100038199 ~ 100049521 (+)
G211071 NA non-coding upstream 1823 99881799 ~ 99882331 (+)
G211054 NA non-coding upstream 5993 99877724 ~ 99878161 (+)
G211057 NA non-coding upstream 34833 99844992 ~ 99849321 (+)
G210982 NA non-coding upstream 224676 99656774 ~ 99659478 (+)
G210976 NA non-coding upstream 240869 99643050 ~ 99643285 (+)
G211077 NA non-coding downstream 12330 99904099 ~ 99904439 (+)
G211087 NA non-coding downstream 80306 99972075 ~ 99973929 (+)
G211098 NA non-coding downstream 101793 99993562 ~ 99994333 (+)
G211102 NA non-coding downstream 113282 100005051 ~ 100005413 (+)
G210983 LOC106561766 other upstream 162171 99720179 ~ 99721983 (+)
G210823 LOC106561768 other upstream 645896 99237378 ~ 99238258 (+)
G210484 NA other upstream 957748 98902788 ~ 98926406 (+)
LOC110510476 LOC106561728 other upstream 984616 98897524 ~ 98944948 (+)
G211779 NA other downstream 567888 100459657 ~ 100461981 (+)
G211809 LOC107574289 other downstream 575909 100467678 ~ 100468157 (+)
G212656 NA other downstream 1590642 101482181 ~ 101486796 (+)
G212674 NA other downstream 1617991 101509760 ~ 101516104 (+)

Expression


Co-expression Network