LOC110500962 (LOC106561782)


Basic Information

Item Value
gene id LOC110500962
gene name LOC106561782
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 100103552 ~ 100113945 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960879.1
ACTTCCGCGCATAGAAACCTGTTTTTGTGACGTTTTCTCTGTGTCGGCCAATGGGGAAGAGGAGCAGAGTTTCGGTGAAGAATTTGAACCGAGTCGCGGAAGCAGCGGACAGACAGAGGACGCTTCGATATAGCTAGAAACTACAATCTTTATGTGGTTTCAGTGTGTTTTAATTAAAGAAACCTATTTTAGccaacacatttttttattttcatttatttaacctgTGTTGTCTTTTTTCGGTGGACCGTGACCATGAGGAGGAGTGAAATCCATGCTGCGGAGTCGGTAGAATGTCTGAATCGAGCCCTTAACCGGTTGAAGGACATCTGGGAGGAAATAGGAATTCCAGAGGATCAGAGACTACAAAGGACTGATGTGGTTAGGAAACATATCAAAGGCTTGCTGGACATGATGATTGCTGAGGAGGACAGTCTAAGGAAGAGATTGATGAGCAGCATAGAATCCTGTCGTAAAGAGCTGGATGTTCTGTTTACTGAGCTTCAACTATCCCCATTTGAGGAGGACGAGGGGAGGACGATGCTACAGCTGGAGAAGGACATCCGGTCACGCCTGGAGGTGATGATGAAACAGAAGAGTCAGAGGGTTAAGGAGCTGAAGAGACTGTCCAAGCAGGACCGGGAGCTGTGTGACATCATGTGTTCAGTCCCCTTCTGTATCGACATGGACACGGTCCCTTCCCTGGAGCAACTGGACAGCTATCGCTCTTACCTCAGCGATCTCACTAAAGAGAAGGATCGTCGCCACGGTGAGTTTGTGGGTATCAAGCGTCAGATCGTTGTGTGTATGGAGGAGCTGGACCAGCTGCCAGACACCAGCTTTGAGAGGGACGTGGTGTGTGAGGACGAGGAGGCCTTCTGTCTGTCCGGCGACAACATCACAGCTCTCCGACTGCTGCTGGGACAGCTGGAGGATCGTAAGACAgagaatgagttggtgtgtaaCTCCTATCGCAGTAAGATCCAGGAGCTGTGGGAGAGACTGCACGTCCTCCAGGAGGAACGAGAGTGCATGTCTGATCACATGGTCCAGTCCAGGAAGAGAAACATGGACGCTTTGGAAGCAGAGTGCCGGCGCCTGGATGAGCTGAAAATGAAGAACATGAAGAATGTGATAGGAGCCATCAGGGCCGAGGTGGCTCTGTTCTGGGAGAGGTGTTTCTACAGCCTGGCGCAGAGACGGGCCTTCACACCCTACTATGACGTTGACTACACCGTGGAGCTACTCAACCTACATGAGGCGGAGCTGCTGAGTCTGAAGAAGCATTATGAAGACCACAGGGAGCTGTTTGAAGGAGTAACCAGGTGGCAAGACAGCTGGACTCTGTTCCTACAACTGGAGAAAAAGGTGACGGATCCTTCTAGATTCAACAACCGAGGAGGGAACCTACTCAAAGAGGAGAAGCAGAGGGCCGAGCTGCAGAAAAGCCTGCCAAAGTTGGAGAAGAGCCTGAAGACCCAGGTAGATCTATGGGAGGAGGAGCAGTACAGGGAGTTCCTGGTTAACGGACAGCGGTTCCTCCAGTACGTTGAGGAACAGTGGGAACTACTGCgactggagaaggagagagggaagaatgaGAGGCAACTGAAGAAGAACCAGCAGATGGAACATGACCTGCTGTATGGTACTGCTCAACGAACCCCCTCCAAAAGACGCCTTGCAGGGACCCCTACTCCTGGCAAAGCAAGAAAGCTCAATGCCACTAGCAGTATCTACGGCTCTACTCCTAACGGCACCTTACGTTCTGCCTTCGGAGGAACCTTGTGTCAGTCTCCGGTCCTCAGACTACCCATGTCTGCCAGCAAGCTTCCTCTGAGGACCCCGAGTTGTGTTGGAAGAACGCCCCGTATGGTGGAGAGGAACAAAGAGAACATCTCCCACCTGAACGGCATGGCTCTGAGCGGTGTGTTAAGGAACCCGGCCCAAAGCCCCGCCTCACACCGTAACATCAGCGTTAACTCTGTCGCCAGAACCTATTCTGAATTTTCGcGATTTCTCTCAAAAGCTTCCAAATCTGTCAAGACAGGACATCTAAACTCTACTGTCACTGATCTCTGAGCTGAGGGATCGGACAGAACCCGTCCCCGATTCATCCAGCTGAGACACCCTTTCTGGCTTGAGTTTCACGGTTTCTGTACCCTGTCCATTTTTGTACATGTCTAGATGAAGGAAATGTTTTTAACACCTGAATATAATGTATCAGAACAGAACCCAGCGTCTCTCGGTGCAACTCGTGTTCTAGCTCTGAGGTTTTCCAGAACTAATGCATCGATCCTGAAAGCCCGCGAGGTCTTTGTTTGTTTTCTTCTGTTGTCTGTATCTAGATGATGTGTCAACACCTACAGAACTTTTTAAATACTCTGTCAGATTTGTTATGTTtttcttagatttttttttttaaagctttgaTCTGAGATTAATGAAATGTCGGGAGGACTTGATAGGTTAAGTTTCATACTGTTTTACGTAGGTCTATGTTCATAACACTCCAAtacttttatttgttttattatcCATGTTGTTGCTAGAGTAAATTGTTGTACTTCATATAAttatgggatgggatgggggtcGCAAATGATGACCATTCTGTCAAATAAAAATTGCCTTTACACTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K16732 PRC1, ASE1, MAP65; Ase1/PRC1/MAP65 family protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960879.1 True 2641 mRNA 0.48 14 100103552 100113945
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110502573 LOC106561753 coding downstream 348662 99726157 ~ 99754890 (-)
LOC110502568 LOC106561766 coding downstream 378225 99697219 ~ 99725327 (-)
LOC118936886 NA coding downstream 484410 99615676 ~ 99619142 (-)
LOC110500900 LOC106561773 coding downstream 488221 99600785 ~ 99615331 (-)
duox LOC106584698 coding downstream 520666 99543789 ~ 99582886 (-)
spi1a LOC106592577 coding upstream 884 100114829 ~ 100126246 (-)
LOC110500995 LOC106561801 coding upstream 45988 100155072 ~ 100161971 (-)
ano3 ano3 coding upstream 106086 100220031 ~ 100340996 (-)
LOC118944188 NA coding upstream 238301 100352246 ~ 100352436 (-)
LOC110501236 LOC106561804 coding upstream 258420 100372365 ~ 100438050 (-)
G211636 NA non-coding downstream 12440 100081357 ~ 100091112 (-)
G211634 NA non-coding downstream 22865 100079252 ~ 100080687 (-)
G211633 NA non-coding downstream 25780 100076683 ~ 100077772 (-)
G211594 NA non-coding downstream 82034 100020993 ~ 100021518 (-)
G211470 NA non-coding downstream 105082 99998105 ~ 99998470 (-)
G211647 NA non-coding upstream 12787 100126732 ~ 100127612 (-)
G211693 NA non-coding upstream 119631 100233576 ~ 100233986 (-)
G211694 NA non-coding upstream 121873 100235818 ~ 100247348 (-)
G211701 NA non-coding upstream 178138 100292083 ~ 100293864 (-)
G211703 NA non-coding upstream 183505 100297450 ~ 100298473 (-)
G211630 LOC106584747 other downstream 29755 100073247 ~ 100073797 (-)
G211447 myo5c other downstream 140078 99959557 ~ 99963474 (-)
G211402 NA other downstream 245697 99856313 ~ 99857855 (-)
G211904 LOC100136012 other upstream 341204 100455149 ~ 100455433 (-)
LOC110502607 ano5 other upstream 355321 100461545 ~ 100543552 (-)
pkp3a pkp3 other upstream 582761 100662972 ~ 100716213 (-)
LOC110502631 LOC106592148 other upstream 987989 100976119 ~ 101191014 (-)

Expression

LOC110500962(LOC106561782) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 125.
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LOC110500962(LOC106561782) Expression in each Bioproject

Bar chart with 21 bars.
LOC110500962(LOC106561782) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network