LOC110500984 (LOC106584750)


Basic Information

Item Value
gene id LOC110500984
gene name LOC106584750
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 100133134 ~ 100140576 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960908.1
ctctctctctctcaaagacaCAAGGGTTGACCACACCAAAATAGCATGTGATGATCTGTATCAGTTCTGTGTGTTGTTCAACAATGTGGGATTGGTTTCACAGCCTGCAGGTCTTTATCTGTCGGGGCACATATACTACAGATCCTCCTGCCACAGAGACACAGGAGCAGCAAAAGGCCACAGCAGCCAACCTCACcgaccacaacacacacagctcatCTCCACCTGAGGCCCCACAGAGAAACAACCCTGGCTACCGGAAACCGTGGAAAGTAGGCGGTTTAGTTCAGCGCTGCACAccaataaaatactactactattctTTAGCCCTCCCCAGAAAGCTGAGCATCAATATAATCAAGACTATTCGTCAGGATGAGTGGCACGCACTCCACCTGCAGAGAATGACAGCCAGTTTTATCGGCATGGCTGTGTCCATCATCCTGTTTGGCTGGGTGATCGGAGCTCTGGGCTGCTGTCAGCAGCATGACCTGATGCAGTACGTAGCGGGACTGCTCTTTCTCATGGGAGGAACGTGCTGTATCATCTCTCTGTGTACATGTGTAGCAGGGATTAACTTCCAACTGTCCCGTTATCCTCGCTACATGTATGGGATCCCAGAGGACATCAGTCACGGATACGGCTGGTCCATGTTCTGCGCATGGGGGGGCCTAGGTCTCACCCTATTGGCCGGCTTCCTGTGCACGCTGGCTCCTTCCCTCTACCCCCCCGTGCCTCACACTATGGTAGAGAGGCTGCAACGCAAGCCTCGACATGAGAACGGCTGTGTGTgacaccatagaaatagaattactatTTGACTTCAATGGGAATGTTCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCATTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCATTCTAGCCCCATTCTAGTAATAGGAATGTCCATTCTAGTAATAGGAATGTCCGTTCTAGTAATAGGAATGACCATTCTAGTAATGGGAATGTGTGTTCTAGTAATGGGAATGTCCATTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCATTCTAGCCCCATTCTAGTGATAGGAATGTCCATTCTAGTAATAGGAATGTCCATTCTAGTAATAGGAATGTCCGTTCTAGTAATGGGAATGACCATTCTAGTAATGGGAATGTGTGTTCTAGTAGTGGGAATGTCCATTCTAGTAATGGGAATATCCATTGTTGTAATGGGAATATTCATTCTAGTAATGGGAATGTCCGTTCTAGTAATGAGAATGTCCGTTCTAGTAATGGGAATGTCCATTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGACCGTTCTAGTAATGGGAATGCCCGTTCTAGTAATGGGAATGCCCGTTCTAGTAATGGGAATGTCCATTCTAGTAATGGGAATGTGAATGTCCATTCAAGCAATGGGAATGTCTGTTCTAGTAATGGGAATACCCATTCTAGTAATGGGAATGTCCATTTTTGTAATGGGAATATCCGTTGTAGTAATGGGAATGCCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGACCGTTCTAGTAATGTGAATGTCCGTTCTAGTAATGGTAATGTCCGTTCTAGTAATGGTAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAACGGGAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATTGGAATGTGTGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCATTTGAGAATGTCTGTtctagtaattctatttctatgtgtggCACTCTGCCAAACCTTCAACTCCCAGTGACAGGAGTGTGTGACCGTGTCAGTATCTGCCAGACTTTCCAGTGACAGGACACTCATCCATCCCTCTTGTCTCTTCTCCATCCTTTGACAGTCAGTCATCCCTTCCTCTGAAAAAAGAAGTTGTTGATATGTGCCGGTCTGACTGGACTGGGGACGTTACCCAGGGACTAAGAAGTAAGATCTGTCAGACACACAGCATTGATTGCACAAAGAAAAGAAACAGCCAAAAATATTCTGTCTCTCAAGCTTGAAGGGGAATTTGTCAGGGTTGGATGATGACAGTTTACTGAAGAGGAATTCAAAATCTTCTTCTGGTGCTTTCTTTTCTTCTGTcctccttctgtcctcctcttcttcctcctccctaaCCAAAACTGTCAACAGCTACAGAATTATATTTCTGTCCCATAATGAATTGTTCGGTGGAGAAGTTACTCTAGTAAATATCTTCCTGTACCTTTGACCTTTGATGCTGGTTCTACAAAATTGAAGAAGACAGAAGAACAATGATAGCACCAACTTTAAGAGTTGAATTTCCACTGCGATGTTCACTTAAGGGCTCTATTCTGTCCGGATCTCTGAAGCATTACAGATCTCTGAAGAGTTACAGATCTCTGGAGAGTTATAGGTCTCTGAAGCATTACAGATCGCTGGAGCGAAGTGTTACAGATCGCTGGAGCGTTACAGatcgctgaagcgttacagatctCTGAAGAGTTACAGATCTCTGAAGAGTTACAGATCTCTGAAGAGTTACAGATCTCTGAAGCATTACAGATCTCTGAAGAGTTACAGATCTCTGAAGAGTTACAGATCTCTGAAGAGTTACAGGTCTCTGAAGAGTTACAGGTCTCTGAAGAGTTACAGGCCTCTGAAGAGTTACAGGTCTCTGAAGAGTTACAGATCTCTGAAGCGTTACAGATCTCTGAAGCGTTACAGATCTCTGAAGCGTTACAGATCTCTGAAGCGTTACAGatcgctgaagcgttacagattgcgCAATGTAAATGTAAGATTGAGCCGACCtaatgcagcgtttaccgtgaatgcagtatCCACTAACGCagaaacattgcctttaaatttcaaccACGATGTAACGCTGAACCTCCGCTGTACGTATTGAATAGAGGGCCCTTAGTCTCCCACTGACGTCAATGCACGGCCAAGTGAAAATTCAACATGTTCCCCTAGATAAGACTGAATAAAGTTGAAAATTAAAATAATATGGATGTGTATTCTCACATTTTTGAAGAGCAATCATGTGGTATTCCTTTATGTTCCCACTGAAACCAAAATAATACGTCAattacattttgaaaatgtatgCAGGTTTGCATTTGTATGTATTCAAAGAAAACATGAGTATTAATTAAGATACAAGACTGTATTTGATGGGAAATGTTTTGATGTTTTTTTCTGTTTACTGATCATGATAGCCCGTCCAATCAAGATATTTTTGAAAAATAAAATGATGATACAAACTGTT
>XM_036960904.1
TGTCGAACAGAAGGAATCTCTTCTATACACTACCGCGTCCGGTGGAACATCATGTCTGCTATGAGGACGTTGACGGTCGCGGGATTGTTTCTGGCGTTTTGCGCGTTGGGACTCATAGCAGTCGCAATATGTACTGACAATTGGTACGAGACGGATGCAAGGAGGCACAGGGAACGTTGTAAGAATTATTCCAACAAAAGGAACGACCCTGGATTCATCTATATCTCCAACCAGAACCTCCCACTCCGTATGCTACCGAAGGAGAATAACGTGGAGAGGAAGGGGTCGAGTGGAGGACTCCTCCTGCGGGCTAAGCGGCACTTCTTGCCCCCCGCCCCGGCCATGGAGTCCCTCTGCAGTCGGCAGTACAACTCCACCATCTCCGGGCTGTGGAGGAAATGTCATCGGGAGGGATTCGACCTGGAGACAGAGGATCTCATCTTTAAAGGTTTAGTTCAGCGCTGCACAccaataaaatactactactattctTTAGCCCTCCCCAGAAAGCTGAGCATCAATATAATCAAGACTATTCGTCAGGATGAGTGGCACGCACTCCACCTGCAGAGAATGACAGCCAGTTTTATCGGCATGGCTGTGTCCATCATCCTGTTTGGCTGGGTGATCGGAGCTCTGGGCTGCTGTCAGCAGCATGACCTGATGCAGTACGTAGCGGGACTGCTCTTTCTCATGGGAGGAACGTGCTGTATCATCTCTCTGTGTACATGTGTAGCAGGGATTAACTTCCAACTGTCCCGTTATCCTCGCTACATGTATGGGATCCCAGAGGACATCAGTCACGGATACGGCTGGTCCATGTTCTGCGCATGGGGGGGCCTAGGTCTCACCCTATTGGCCGGCTTCCTGTGCACGCTGGCTCCTTCCCTCTACCCCCCCGTGCCTCACACTATGGTAGAGAGGCTGCAACGCAAGCCTCGACATGAGAACGGCTGTGTGTgacaccatagaaatagaattactatTTGACTTCAATGGGAATGTTCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCATTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCATTCTAGCCCCATTCTAGTAATAGGAATGTCCATTCTAGTAATAGGAATGTCCGTTCTAGTAATAGGAATGACCATTCTAGTAATGGGAATGTGTGTTCTAGTAATGGGAATGTCCATTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCATTCTAGCCCCATTCTAGTGATAGGAATGTCCATTCTAGTAATAGGAATGTCCATTCTAGTAATAGGAATGTCCGTTCTAGTAATGGGAATGACCATTCTAGTAATGGGAATGTGTGTTCTAGTAGTGGGAATGTCCATTCTAGTAATGGGAATATCCATTGTTGTAATGGGAATATTCATTCTAGTAATGGGAATGTCCGTTCTAGTAATGAGAATGTCCGTTCTAGTAATGGGAATGTCCATTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGACCGTTCTAGTAATGGGAATGCCCGTTCTAGTAATGGGAATGCCCGTTCTAGTAATGGGAATGTCCATTCTAGTAATGGGAATGTGAATGTCCATTCAAGCAATGGGAATGTCTGTTCTAGTAATGGGAATACCCATTCTAGTAATGGGAATGTCCATTTTTGTAATGGGAATATCCGTTGTAGTAATGGGAATGCCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGACCGTTCTAGTAATGTGAATGTCCGTTCTAGTAATGGTAATGTCCGTTCTAGTAATGGTAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAACGGGAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATTGGAATGTGTGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCGTTCTAGTAATGGGAATGTCCATTTGAGAATGTCTGTtctagtaattctatttctatgtgtggCACTCTGCCAAACCTTCAACTCCCAGTGACAGGAGTGTGTGACCGTGTCAGTATCTGCCAGACTTTCCAGTGACAGGACACTCATCCATCCCTCTTGTCTCTTCTCCATCCTTTGACAGTCAGTCATCCCTTCCTCTGAAAAAAGAAGTTGTTGATATGTGCCGGTCTGACTGGACTGGGGACGTTACCCAGGGACTAAGAAGTAAGATCTGTCAGACACACAGCATTGATTGCACAAAGAAAAGAAACAGCCAAAAATATTCTGTCTCTCAAGCTTGAAGGGGAATTTGTCAGGGTTGGATGATGACAGTTTACTGAAGAGGAATTCAAAATCTTCTTCTGGTGCTTTCTTTTCTTCTGTcctccttctgtcctcctcttcttcctcctccctaaCCAAAACTGTCAACAGCTACAGAATTATATTTCTGTCCCATAATGAATTGTTCGGTGGAGAAGTTACTCTAGTAAATATCTTCCTGTACCTTTGACCTTTGATGCTGGTTCTACAAAATTGAAGAAGACAGAAGAACAATGATAGCACCAACTTTAAGAGTTGAATTTCCACTGCGATGTTCACTTAAGGGCTCTATTCTGTCCGGATCTCTGAAGCATTACAGATCTCTGAAGAGTTACAGATCTCTGGAGAGTTATAGGTCTCTGAAGCATTACAGATCGCTGGAGCGAAGTGTTACAGATCGCTGGAGCGTTACAGatcgctgaagcgttacagatctCTGAAGAGTTACAGATCTCTGAAGAGTTACAGATCTCTGAAGAGTTACAGATCTCTGAAGCATTACAGATCTCTGAAGAGTTACAGATCTCTGAAGAGTTACAGATCTCTGAAGAGTTACAGGTCTCTGAAGAGTTACAGGTCTCTGAAGAGTTACAGGCCTCTGAAGAGTTACAGGTCTCTGAAGAGTTACAGATCTCTGAAGCGTTACAGATCTCTGAAGCGTTACAGATCTCTGAAGCGTTACAGATCTCTGAAGCGTTACAGatcgctgaagcgttacagattgcgCAATGTAAATGTAAGATTGAGCCGACCtaatgcagcgtttaccgtgaatgcagtatCCACTAACGCagaaacattgcctttaaatttcaaccACGATGTAACGCTGAACCTCCGCTGTACGTATTGAATAGAGGGCCCTTAGTCTCCCACTGACGTCAATGCACGGCCAAGTGAAAATTCAACATGTTCCCCTAGATAAGACTGAATAAAGTTGAAAATTAAAATAATATGGATGTGTATTCTCACATTTTTGAAGAGCAATCATGTGGTATTCCTTTATGTTCCCACTGAAACCAAAATAATACGTCAattacattttgaaaatgtatgCAGGTTTGCATTTGTATGTATTCAAAGAAAACATGAGTATTAATTAAGATACAAGACTGTATTTGATGGGAAATGTTTTGATGTTTTTTTCTGTTTACTGATCATGATAGCCCGTCCAATCAAGATATTTTTGAAAAATAAAATGATGATACAAACTGTT

Function

NR:

description
transmembrane protein 178B-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960908.1 False 3517 mRNA 0.43 4 100133134 100140576
XM_036960904.1 True 3686 mRNA 0.44 4 100134189 100140576

Neighbor

gene id symbol gene type direction distance location
LOC110502598 LOC106584747 coding upstream 54724 100051852 ~ 100078410 (+)
LOC110500952 LOC106561785 coding upstream 83613 100038199 ~ 100049521 (+)
LOC110500941 LOC106561786 coding upstream 105661 100011753 ~ 100027473 (+)
LOC110502593 myo5c coding upstream 124661 99953263 ~ 100008473 (+)
LOC110500932 LOC106561787 coding upstream 181433 99905640 ~ 99951756 (+)
slc5a12 slc5a12 coding downstream 36616 100177192 ~ 100209223 (+)
LOC110501220 NA coding downstream 201974 100342550 ~ 100351946 (+)
LOC118936889 NA coding downstream 276498 100417074 ~ 100419174 (+)
LOC110501156 LOC106567469 coding downstream 297910 100438486 ~ 100444236 (+)
sigirr sigirr coding downstream 497998 100638574 ~ 100655606 (+)
G211524 NA non-coding upstream 1871 100130315 ~ 100131263 (+)
G211519 NA non-coding upstream 6864 100114858 ~ 100126270 (+)
G211513 NA non-coding upstream 28901 100103089 ~ 100104233 (+)
G211508 NA non-coding upstream 41588 100090868 ~ 100091546 (+)
G211506 NA non-coding upstream 49765 100081365 ~ 100083369 (+)
G211533 NA non-coding downstream 15109 100155685 ~ 100159487 (+)
G211532 NA non-coding downstream 19662 100160238 ~ 100160764 (+)
G211541 NA non-coding downstream 31688 100172264 ~ 100172631 (+)
G211546 NA non-coding downstream 41526 100182102 ~ 100220348 (+)
G211551 NA non-coding downstream 52747 100193323 ~ 100195665 (+)
LOC110500919 LOC106584740 other upstream 233257 99896619 ~ 99899881 (+)
LOC110502581 LOC106561777 other upstream 318759 99777695 ~ 99818794 (+)
G210983 LOC106561766 other upstream 411151 99720179 ~ 99721983 (+)
G210823 LOC106561768 other upstream 894876 99237378 ~ 99238258 (+)
G210484 NA other upstream 1206728 98902788 ~ 98926406 (+)
G211779 NA other downstream 319081 100459657 ~ 100461981 (+)
G211809 LOC107574289 other downstream 327102 100467678 ~ 100468157 (+)
G212656 NA other downstream 1341835 101482181 ~ 101486796 (+)
G212674 NA other downstream 1369184 101509760 ~ 101516104 (+)
G212690 NA other downstream 1413809 101554385 ~ 101561158 (+)

Expression


Co-expression Network