slc5a12 (slc5a12)


Basic Information

Item Value
gene id slc5a12
gene name slc5a12
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 100177192 ~ 100209223 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960947.1
AGCACTTTTAGTTATTCAGTTAGCTAAGCAACAACATCTTTAGAGAACggatcagaaagagagagagagacaaaagtattttttaaatttaatttaaatTTATTTGTCAATTAACAAATAAttgaggacaacaacacaaaaaACTTCTACAACATATTTCCATTGTTGCCCTCTGACCACAACCATCTCCTATAACCGGCATGGATGATGAACAACTGGGGACCTTTGTATCGTGGGACTATGTCGTATTCGCATGTCTGTTCGTGGTCTCCTCAGGGATAGGGGTGTTCTTCGCGGTGAAGGAGAGGAAGAACCCCTCATCGGAGTTCCTGGTAGGGGGTCGTCAGATGACCTGCGGTCCCGTGGCTCTGTCCCTCACTGCCAGCTTTATGTCTGCTGTCACGGTGCTCGGGGCACCCTCCGATGTCTACCGTTTTGGGGGGTCGTTCATCCTCTTCGGCGTGGCCTACACCTTCGTGGTCATCGCTACAGCTGAACTGTTTGTGCCAGTGTTCTACAGATCGGGGATCACAAGTACCTACGAGtatttAGAGATACGGTTCTGTAAGGGGGTTCGCATGGCTGCCACTCTGATCTATATTTTGCAGACGATCTTATATACAGGGGTTGTGGTGTTTGCTCCAGCCCTGGCTCTCAATCAAGTCACTGGCTTCAACCTTTGGGGATCTATATTTGCAACGGGCATTGTGTGTACGTTCTACTGCACGCTGGGTGGGCTGAAGGCAGTGGTGTGGACAGATGCGTTccagatggtggtgatggtagtgggcTTCATGACCGTGCTCGTCCAGGGGACCAGGAAAACAGGGGGCGCAGCCTCCGTGTGGGAGGTGGCTAAAAATGGAAACAGACTCGACATCTTTGACTTTGACCCTGACCCACTGAGACGTCATACGTTCTGGACCATCTCTGTTGGGGGAACCTTCACCTGGCTGGGCATCTACGGGGTCAACCAGTCAACTATACAGAGATGCATCTCCTGCAAAACCGAGACACACGCCAAACTAGCTCTGTACTTCAACCTGCTGGGCCTGCTGGTCATCCTGGTGTGCGCGGTGTTCTCCGGACTCATTATGTACGCTTTCTACACCAACTGTGATCCATGGACCGCCCAGTCAGTCACAGCACCAGACCAGCTCATGCCTTATTTTGTCATGGAGATACTGGGGGATTATCCTGGTCTTCCAGGGCTGTTTGTTGCCTGTGCGTTCAGTGGAACACTCAGTACTGTGGCAGCCAGCATCAATGCCCTAGCCACGGTGACCTATGAAGACTTTGTTAAGCAGTGTTGTACTAACCTCTCCAACAAAGCCAGCGGCTGGATCAGCAAAGGACTGTGTATCGTGTTCGGCGTCGCCTGCACCACTATGGCGGTTGCTGCATCCTACATGGGAGGGGTTGTCCAGGCAGCTCTGAGTATCCATGGTATGTGTGGTGGTCCCATGCTGGGTCTCTTCTCTCTGGGAATCATCTTCCCCTGGACCAACTCTATGGGAGCAGCCGGCGGTCTGATAGTGGGCATCGCCATGTCGTTCTGGGCAGGTGTTGGAGCCTTCATCTACCCTGCTCTAGACATCAACACTAgacctctgtctctcagtatggAGGGATGTCTTCAAGCGAACTCATCGGACCCCACCAGCGCTGTTCCACCTTCTCACCTggtccctaccactctaccatcaagGTCGTCCCTGGCTGATCACTGGTACTCCATGTCCTATCTGTACTATAGCGCTGTTGGGTTTTCAGCCACCGTTACTGCTGGCCTGCTCATCTCCTTCATCACAGGACATGGAGTGCCCAGACACAGACACGGTTAAAGACGAAGGTCCCTTTGTCAAGGAAGATATCGGCAGGAAGGGGATGAAGAGGAAAGTACAACCTGCCAAAAACTGTTATAACCTGCAAGAGAAAGCACATGACAACGCTGGCTTTACCGAAGACACAAAGCCTTTTTAAAAAGCC
>XM_036960937.1
GCACTTTTAGTTATTCAGTTAGCTAAGCAACAACATCTTTAGAGAACggatcagaaagagagagagagacaaaagtattttttaaatttaatttaaatTTATTTGTCAATTAACAAATAAttgaggacaacaacacaaaaaACTTCTACAACATATTTCCATTGTTGCCCTCTGACCACAACCATCTCCTATAACCGGCATGGATGATGAACAACTGGGGACCTTTGTATCGTGGGACTATGTCGTATTCGCATGTCTGTTCGTGGTCTCCTCAGGGATAGGGGTGTTCTTCGCGGTGAAGGAGAGGAAGAACCCCTCATCGGAGTTCCTGGTAGGGGGTCGTCAGATGACCTGCGGTCCCGTGGCTCTGTCCCTCACTGCCAGCTTTATGTCTGCTGTCACGGTGCTCGGGGCACCCTCCGATGTCTACCGTTTTGGGGGGTCGTTCATCCTCTTCGGCGTGGCCTACACCTTCGTGGTCATCGCTACAGCTGAACTGTTTGTGCCAGTGTTCTACAGATCGGGGATCACAAGTACCTACGAGtatttAGAGATACGGTTCTGTAAGGGGGTTCGCATGGCTGCCACTCTGATCTATATTTTGCAGACGATCTTATATACAGGGGTTGTGGTGTTTGCTCCAGCCCTGGCTCTCAATCAAGTCACTGGCTTCAACCTTTGGGGATCTATATTTGCAACGGGCATTGTGTGTACGTTCTACTGCACGCTGGGTGGGCTGAAGGCAGTGGTGTGGACAGATGCGTTccagatggtggtgatggtagtgggcTTCATGACCGTGCTCGTCCAGGGGACCAGGAAAACAGGGGGCGCAGCCTCCGTGTGGGAGGTGGCTAAAAATGGAAACAGACTCGACATCTTTGACTTTGACCCTGACCCACTGAGACGTCATACGTTCTGGACCATCTCTGTTGGGGGAACCTTCACCTGGCTGGGCATCTACGGGGTCAACCAGTCAACTATACAGAGATGCATCTCCTGCAAAACCGAGACACACGCCAAACTAGCTCTGTACTTCAACCTGCTGGGCCTGCTGGTCATCCTGGTGTGCGCGGTGTTCTCCGGACTCATTATGTACGCTTTCTACACCAACTGTGATCCATGGACCGCCCAGTCAGTCACAGCACCAGACCAGCTCATGCCTTATTTTGTCATGGAGATACTGGGGGATTATCCTGGTCTTCCAGGGCTGTTTGTTGCCTGTGCGTTCAGTGGAACACTCAGTACTGTGGCAGCCAGCATCAATGCCCTAGCCACGGTGACCTATGAAGACTTTGTTAAGCAGTGTTGTACTAACCTCTCCAACAAAGCCAGCGGCTGGATCAGCAAAGGACTGTGTATCGTGTTCGGCGTCGCCTGCACCACTATGGCGGTTGCTGCATCCTACATGGGAGGGGTTGTCCAGGCAGCTCTGAGTATCCATGGTATGTGTGGTGGTCCCATGCTGGGTCTCTTCTCTCTGGGAATCATCTTCCCCTGGACCAACTCTATGGGAGCAGCCGGCGGTCTGATAGTGGGCATCGCCATGTCGTTCTGGGCAGGTGTTGGAGCCTTCATCTACCCTGCTCTAGACATCAACACTAgacctctgtctctcagtatggAGGGATGTCTTCAAGCGAACTCATCGGACCCCACCAGCGCTGTTCCACCTTCTCACCTggtccctaccactctaccatcaagGTCGTCCCTGGCTGATCACTGGTACTCCATGTCCTATCTGTACTATAGCGCTGTTGGGTTTTCAGCCACCGTTACTGCTGGCCTGCTCATCTCCTTCATCACAGGACACACCAGGAGTCAAGATGTGAAACCGTGGCTCCTACGACCGGTTTGTAACCTCTTCTGCTTTTGGTCAAAGAAGTACAagaagatgtgttggtgtggcGTCCATCACGAATTAAAACAGGACATGGAGTGCCCAGACACAGACACGGTTAAAGACGAAGGTCCCTTTGTCAAGGAAGATATCGGCAGGAAGGGGATGAAGAGGAAAGTACAACCTGCCAAAAACTGTTATAACCTGCAAGAGAAAGCACATGACAACGCTGGCTTTACCGAAGACACAAAGCCTTTTTAAAAAGCCATAGAACTAGAATGACTACTTACTGTAATTCTATGTGTGTGTTAAAAGCATTATAATGTTTAGTCTCTGAAAGGTAATAAAAATGGTTAGATTGGTGACTA
>TU239887
GACAGGACACACCAGGAGTCAAGATGTGAAACCGTGGCTCCTACGACCGGTTTGTAACCTCTTCTGCTTTTGGTCAAAGAAGTACAagaagatgtgttggtgtggcGTCCATCACGAATTAAAACAGGACATGGAGTGCCCAGACACAGACACGGTTAAAGACGAAGGTCCCTTTGTCAAGGAAGATATCGGCAGGAAGGGGATGAAGAGGAAAGTACAACCTGCCAAAAACTGTTATAACCTGCAAGAGAAAGCACATGACAACGCTGGCTTTACCGAAGACACAAAGCCTTTTTAAAAAGCCATAGAACTAGAATGACTACTTACTGTAATTCTATGTGTGTGTT

Function

symbol description
slc5a12 Enables secondary active monocarboxylate transmembrane transporter activity. Predicted to be involved in sodium ion transport. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in gut; immature eye; nervous system; neurocranial trabecula; and pleuroperitoneal region. Orthologous to human SLC5A12 (solute carrier family 5 member 12).

NR:

description
sodium-coupled monocarboxylate transporter 2-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960947.1 False 1989 mRNA 0.51 14 100177192 100209122
XM_036960937.1 False 2211 mRNA 0.50 15 100177193 100209223
TU239887 True 347 lncRNA 0.39 2 100206341 100209165

Neighbor

gene id symbol gene type direction distance location
LOC110500984 LOC106584750 coding upstream 36616 100133134 ~ 100140576 (+)
LOC110502598 LOC106584747 coding upstream 98782 100051852 ~ 100078410 (+)
LOC110500952 LOC106561785 coding upstream 127671 100038199 ~ 100049521 (+)
LOC110500941 LOC106561786 coding upstream 149719 100011753 ~ 100027473 (+)
LOC110502593 myo5c coding upstream 168719 99953263 ~ 100008473 (+)
LOC110501220 NA coding downstream 133327 100342550 ~ 100351946 (+)
LOC118936889 NA coding downstream 207851 100417074 ~ 100419174 (+)
LOC110501156 LOC106567469 coding downstream 229263 100438486 ~ 100444236 (+)
sigirr sigirr coding downstream 429351 100638574 ~ 100655606 (+)
LOC110502612 LOC106584763 coding downstream 576308 100785531 ~ 100848341 (+)
G211541 NA non-coding upstream 4561 100172264 ~ 100172631 (+)
G211520 NA non-coding upstream 10718 100120365 ~ 100166474 (+)
G211532 NA non-coding upstream 16428 100160238 ~ 100160764 (+)
G211533 NA non-coding upstream 17705 100155685 ~ 100159487 (+)
G211524 NA non-coding upstream 45929 100130315 ~ 100131263 (+)
G211545 NA non-coding downstream 726 100209949 ~ 100211816 (+)
G211558 NA non-coding downstream 14833 100224056 ~ 100224330 (+)
G211562 NA non-coding downstream 19901 100229124 ~ 100229337 (+)
G211563 NA non-coding downstream 40942 100250165 ~ 100250370 (+)
G211564 NA non-coding downstream 42000 100251223 ~ 100251441 (+)
LOC110500919 LOC106584740 other upstream 277315 99896619 ~ 99899881 (+)
LOC110502581 LOC106561777 other upstream 362817 99777695 ~ 99818794 (+)
G210983 LOC106561766 other upstream 455209 99720179 ~ 99721983 (+)
G210823 LOC106561768 other upstream 938934 99237378 ~ 99238258 (+)
G210484 NA other upstream 1250786 98902788 ~ 98926406 (+)
G211779 NA other downstream 250434 100459657 ~ 100461981 (+)
G211809 LOC107574289 other downstream 258455 100467678 ~ 100468157 (+)
G212656 NA other downstream 1273188 101482181 ~ 101486796 (+)
G212674 NA other downstream 1300537 101509760 ~ 101516104 (+)
G212690 NA other downstream 1345162 101554385 ~ 101561158 (+)
G211551 NA non-coding upstream 10676 100193323 ~ 100195665 (+)

Expression


Co-expression Network