LOC110501156 (LOC106567469)


Basic Information

Item Value
gene id LOC110501156
gene name LOC106567469
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 100438486 ~ 100444236 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578569.2
TCTGACACTAAATCGTAACAATtcattaaaacaaaaatgtgttttttgttgttatgcataaggttagcagtggggttaaggttagatttaaaTGCAAAATTTAAGAAGATATTTTTGAAATGGGCGGGGTTTaatactttgtggctgtgttaactagttATAACCCAATTTGTGGGGGAAAGCCGAGAAAACGATGACAAATTGTTACACAAGTTGTTAAAACACAAAACTTTTAATAACAAACTTTTAAATCAATTCAAACAACATTTTAACATTTCCAAATACAAAAATGCGAATACAACACCGGAACCTCACGTGCAGATATTCTAAGAGCAGATAGCGCCACATGGAGGCTGTTCTGAAGAACTTGGAGAGGACCTGGGAGCTACTCGCCTTGATGCAGACCGAGTAATGGGACAATCCCAGGACAGAGCCTTCCAATGGACTCAGTACGAACACCTCCACGCAAACATCGTGGAGATCTTGGAAAAACAACTACAGGCAACCAACGAAAGCTTCGAACAATTGTTCAAGGATACAACGGATATCACGTTCTCTGACCTGTAGCAGTGTCAACTCTTGCTGCTCGTTGGATTTCAAAAGAACGCCTCGGTCCCAAACTGTTTGAACTTCTAGTTTCAGAACGGTTGGAGCGAAATCGAAGGATGCCACAAGTCATTGTACTGAGCTCattgaaatcaaatcaagtcTTGAGTGCCATTCATTTGAAACGCAGTACATCAGTTCCTAGTCCTTACGCTGCGAACACACCGACTGTGTCATTGCGTTTCgatacaccagaagtacattcatttccaatggaacgctgcatTTGCCTTCAGCAATGCGTTGCAGAGACAGTTTACTGcattctgtgtggtgcatacgttCGATTTATCGAACATATTCATCAAATTGTATGTGTAGACTTGACAGAAAATAGCAAAATTtgaatgtagattttttttttgcacacATATTCAGTAAAAATGTGGGATTACATAAAAAGTTTGATTGCATACTTTCTtcacatttttttattaattaatttgcCAAGTATATTATTTATTCgatgacatccacaaatgaattgTGATAGCCTATAGTATAATGCAGTTTTTGAGCGAAATGCAATAATAAATAGTCAAGATAGCAGAGTAGGCTCTTTCAACAATGAGACCAACGTTGAGGAAGGTGGTCTTGATCGCGCTGTTGGGCCGGGACCAGCCCCGCCAAAAGCGCAGGTCTGTGTAGGTCCAGAGATGGTTAAAGTCCCGAAAGCAGGCaggggagttccaccgtctcatTCAAGAGCTTCGACTGCTTGGAGAGGAATTCCGAAGTTACTTTCGTCTGGACCGAAGCCAGTTCGATCACCTGCTCCAGATGGTTGGAGCCAGGATCACCCGGATGGATACCAACTACCGGGAGTCCATCAGCCCAGTTGAACGCCTGGCGATTTGTCTCCGatttttggcgACAGGGGACTCCTACAGGACCATAGGATTCAGCTTCCGAGTTGGACGGTCCACGGTGGCAGGCATTGTCCCTTCTGTGGCACAAGTCATTTGGGACTGTCTGGTTGGTGAATACATGCCTGTCCCCAAGGAGGAAGCCATCGCTGCCGAGATCCTGGAGAGGTGGAATTTCCCCAACTGTCTTGGCTCCATTGACGGGAAACATGTAGTAATCCTGGCTCCACCTTGCTCAGGTTCGCAATTCTACAACTACAAGGGTACATATTCAGTTGTACTCTTGGCTGTAGTAGATGCCATCTACTGTTTCCGTGTTGTCGATGTTGGTGCTTACGACAAGGGAGGTGATGGTGTGACCCTCCGGGACTCTGCCTTCGGCCAGGCACTTCAGGATGGCACCCTGGAGATTCCACCACCTGCATCACTCCCTGGAGCTGAAGACCTGGGACCTGTTCCCCACGTCTTCGACGGCGACGAGGCCTTCCCTTTAAGACCCAACCTCACGAGGCCTTCCCTTTAAGACCCAACCTCACGAGGCCTTCCCTTTAAGACCCAACCTCACGAGGCCTTCCCTTTAAGACCCAACCTCACGAGGCCTTCCCTTTAAGACCCAACCTCACGAGGCCTTCCCTTTAAGACCCAACCTCACGAGGCCTTCCCTTTAAGACCCAACCTCACGAGGCCTTCCCTTTAAGACCCAACCTCATGAGGCCCTACGCTGGATGCCAGCTGCCATTGCCAAAGCCTGTAAGGATCTTCAACAAACGACTGTCCAGGGCAAGGTTAGTTGTTGAATGCGCTTTTGGGATTTTGGAAGCCCGATGGAGAATGTATTGGAGAGTGCTTGGTCTCAGCCCCTCAAACGTTGATGCCTGGGTGAATGCCACATGTGTTCTCCACAACTACCTGCGGAGGTCATTCCAGTGTTCTCCACAACTACCTGCGGAGGTCATTCCAGTGTTCTCCACAACTTCCTGCGGAGGTCATTCCAGTGTTCTCCACAACTTCCTGCGGAGGTCATTCCAGTGTTCTCCACAACTACCTGCGGAGGTCATTCCAGGAGCCGCTCCGGATGGAGATGGGCACGCCAAATGGTCACCAACCTGATGTCACCGGGTGCCAACAACGCCCCCAGACAGGCACTCCAGGTGAGGGAGAAGGTGACCACCTACTTCTCGTCGCCAGCAGGTGAAGTCCCATGGCAGTATGCTGTGGAGTGAAACGGCTCTTTTaagattatttttaattttttttctcccccagATTACTTTATGTATCATTGTCTCTCTTCATTTGGAAGTTATATTTAAGTGACATTTGGGAGTAAAGACCACACCTTaaccccttccctctcccatTAACGTCAGTATTATACACACCTGGCATGGTGCACCAGGTGAGCGGGAGCACTAATTAAGGTTATACGACAGTTAATATGATAACACAGGGTAACCTAGGGTCCATACAAATAGTACAGTTTACCATCATGTTCACTGGCCTGACAAAATACAGGTGGAGAGAGAACTAATTAGGAAGAGAATGTGTTTTTACTTTCATCTCGTCTGCAAAAGGTATAGGAAAGAAATAAGCAGATTCAGTCTAAATGAGATATTAATGAACAACTGAAACTACTGACTATGAAAACATAATTTCATAAATATTCAAATACAGGAAAGAACATGACAGGTATGTgtgttgtaaaaataaaaaaaataaaaaaattaaaccaTTGAAAGAGATGTgtgtgtaaaaataaaaaaaaataatgtgtaGCATGTAATCTGTAAGAGAACAACAAGAGCATGTAattttggcacaactgcagacaGATACAGGGACAACTCATAAAGACTAGACGTAATAGGGGAACTTCAGACATggccataaagagagagagagtgcagggcACTGGAGAgctgagggacaga

Function

NR:

description
uncharacterized protein LOC110535953

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578569.2 True 3403 mRNA 0.45 2 100438486 100444236

Neighbor

gene id symbol gene type direction distance location
LOC118936889 NA coding upstream 19312 100417074 ~ 100419174 (+)
LOC110501220 NA coding upstream 86540 100342550 ~ 100351946 (+)
slc5a12 slc5a12 coding upstream 229263 100177192 ~ 100209223 (+)
LOC110500984 LOC106584750 coding upstream 297910 100133134 ~ 100140576 (+)
LOC110502598 LOC106584747 coding upstream 360076 100051852 ~ 100078410 (+)
sigirr sigirr coding downstream 194338 100638574 ~ 100655606 (+)
LOC110502612 LOC106584763 coding downstream 341295 100785531 ~ 100848341 (+)
LOC118936893 NA coding downstream 403938 100848174 ~ 100860603 (+)
LOC110501031 LOC106592222 coding downstream 485132 100929368 ~ 100964786 (+)
best1 LOC102229874 coding downstream 901049 101345285 ~ 101371174 (+)
G211768 NA non-coding upstream 56417 100381819 ~ 100382069 (+)
G211766 NA non-coding upstream 64010 100372420 ~ 100374476 (+)
G211736 NA non-coding upstream 72658 100358060 ~ 100365828 (+)
G211582 NA non-coding upstream 104596 100333528 ~ 100333890 (+)
G211796 NA non-coding downstream 2509 100446745 ~ 100446946 (+)
G211797 NA non-coding downstream 2875 100447111 ~ 100447429 (+)
G211801 NA non-coding downstream 10400 100454636 ~ 100454836 (+)
G211804 NA non-coding downstream 17764 100462000 ~ 100462554 (+)
G211805 NA non-coding downstream 18713 100462949 ~ 100464466 (+)
LOC110500919 LOC106584740 other upstream 538609 99896619 ~ 99899881 (+)
LOC110502581 LOC106561777 other upstream 624111 99777695 ~ 99818794 (+)
G210983 LOC106561766 other upstream 716503 99720179 ~ 99721983 (+)
G210823 LOC106561768 other upstream 1200228 99237378 ~ 99238258 (+)
G210484 NA other upstream 1512080 98902788 ~ 98926406 (+)
G211779 NA other downstream 15421 100459657 ~ 100461981 (+)
G211809 LOC107574289 other downstream 23442 100467678 ~ 100468157 (+)
G212656 NA other downstream 1038175 101482181 ~ 101486796 (+)
G212674 NA other downstream 1065524 101509760 ~ 101516104 (+)
G212690 NA other downstream 1110149 101554385 ~ 101561158 (+)

Expression


Co-expression Network