sigirr (sigirr)


Basic Information

Item Value
gene id sigirr
gene name sigirr
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 100638574 ~ 100655606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961133.1
GTTGGATTTTTAAACTCGCTTGTATGACTCTTTTATTTTAAAAACCCTGTTCCGTTTAAGCATGTTGGGAGGACTTTTGCGACCAGTAGACTAAGCAGATAGCCTACTTCTGAAAGTTGACTTGAACAGGTGAGACGTCACGTGACCACCCGTACACAGAAGTCAGTCAAGCAGTTGAACCGAGTCATGCCTTGGgagttattatttttatttaactacaaTTCCTAATGTTTTATCCACTGGTGCTGGGTGATACGATATAATCCTAGGACCATAGCGCGTGCCTTGCGATTGAAAACTCGGAATAAGAAGGAAAGAGAACGATTTTACCTTACAAAATGACTTCTAACCAGTTGGCTTTCATTCTGACATGTACTTTATGGAACAGGATATCGGTGTGTGCTGGAGAATCCCTGTGCACCCAAGCCCCAGAGTTTCAGTTACCCAGTGGGGGGCAGTCTGAGGTGTGGGAGACCCTGGGTTCCTTTGTGGCTCTGAACTGTACAGCCGTGCTGTCCTGGAACCAGACGGACCAACGGTGTGACGCTACCTCCCGGACTCTGCTCTGGAGCAAAGATGGGACCCCTCTCAACCTCAGCCTTTACCCACAGAACACATCCACCTGGACTCCCAGCCAATCCCAAATGATTGTGAGCAGTGTACTGCAGGTCCAGGTTAGAGAGCAGGCTGACTTTGGCCTCTACTCCTGTGAGGTGAGGAACACCTCTGCTGACTTCAGCCTGCAGAATACCGcccagcccagccacacAGCATCAGTGATAGCAGCCATCAGTCTCTTCCTGATCCTGACTATAGCTGCTGTTGTCTACTCCAGGTGTCGTCTCAATATCAAACTCTGGTACAGGAACTCCTATGGAGACTATGAGATCAATGATGGGAAGCTGCATGATGCCTACTTCTCCTATGTCAACAACGAATACGACAGAAAGTTGGTCAACTTCATCCTCAAACCTCACCTGGTGAACAAATCTGGACATAAGCTACACCTCAGTGATAACAACATCCTACCTGGGGGTGAGCCGTCTGCTGAGTTCCTGATGAACGTTAGTCACTGTCGGCGCCTCATTGTAGTGATGTCACACGCCTACCTAGAACAGGACTGGTGCTGTAACAACTTTAGACAGGGCCTTCTGCACCTGCTGGAGCTGTCCCAGAggcccatcatcatcatcacattgGAGGGTCAGGTCAAACTCATGAGACCCGATGTGGTCCAGCAACTCAGAGAACACCGACACAAACTCACCTTGCTCACCTGGTCGGGATCACACTCCATGCTGCCGTCGTCAGTGTTCTGGAAGGAGTTGGCCCTGGCCATGCCTCATAGGGTTGTGTTCCACAGCGACACGGCAGGGGACCCCCAGACTCTCTTCCAAGACGATAAGGACCCCATGCTCACCCTCAACCCAGACTACCTGGACTGTCGCCCTGACCCTGTTGGAGACCTGGGTAAAACCAAgcCTTCATCTCCCAGTCTACAAGGCACTGGCATCCAGAGCCCCTGTGCTGCCTATGTTCCCCTCGGTCCCTGCATCCCTGACTGAGTCCAAACTCTCGGATATAGATGTATCGGACCTGGGATCGCGCAACTACGGAGCTCGCAATGACTTCTACTGCCTGGTTACAGAGGACAACATCTAAAAAAGACTGTAGCTTCTGAAGAAAAAAGGAGAACAAGATCTCCAACTTCTACTCTTCACTCTTCACTTCAGTCTGAATGTAAAACAGGTTCTCTCACCAACACTATCTACAACTTCCTGATGTTTCCATATTCAAGCAAGTGTtacatttaatatatttttttttaaagtgaataATTTTGTTCTTGGAAcaagtttgatttgatctgttTATTGAGATTTGTCCATATTTGAAACTTttcacatatacactgagtggacaaaacattaggaacacctgctctctctatccacgacatagactgaccaggtgaatccaggtgaaagctatgatcccttattgatgtcacttgttcaatccacttccagcagtgta
>XM_036961124.1
GATTTTTAAACTCGCTTGTATGACTCTTTTATTTTAAAAACCCTGTTCCGTTTAAGCATGTTGGGAGGACTTTTGCGACCAGTAGACTAAGCAGATAGCCTACTTCTGAAAGTTGACTTGAACAGGTGAGACGTCACGTGACCACCCGTACACAGAAGTCAGTCAAGCAGTTGAACCGAGTCATGCCTTGGgagttattatttttatttaactacaaTTCCTAATGTTTTATCCACTGGTGCTGGGTGATACGATATAATCCTAGGACCATAGCGCGTGCCTTGCGATTGAAAACTCGGAATAAGAAGGAAAGAGAACGATTTTACCTTACAAAATGACTTCTAACCAGTTGGCTTTCATTCTGACATGTACTTTATGGAACAGGATATCGGTGTGTGCTGGAGAATCCCTGTGCACCCAAGCCCCAGAGTTTCAGTTACCCAGTGGGGGGCAGTCTGAGGTGTGGGAGACCCTGGGTTCCTTTGTGGCTCTGAACTGTACAGCCGTGCTGTCCTGGAACCAGACGGACCAACGGTGTGACGCTACCTCCCGGACTCTGCTCTGGAGCAAAGATGGGACCCCTCTCAACCTCAGCCTTTACCCACAGAACACATCCACCTGGACTCCCAGCCAATCCCAAATGATTGTGAGCAGTGTACTGCAGGTCCAGGTTAGAGAGCAGGCTGACTTTGGCCTCTACTCCTGTGAGGTGAGGAACACCTCTGCTGACTTCAGCCTGCAGAATACCGcccagcccagccacacAGCATCAGTGATAGCAGCCATCAGTCTCTTCCTGATCCTGACTATAGCTGCTGTTGTCTACTCCAGGTGTCGTCTCAATATCAAACTCTGGTACAGGAACTCCTATGGAGACTATGAGATCAATGATGGGAAGCTGCATGATGCCTACTTCTCCTATGTCAACAACGAATACGACAGAAAGTTGGTCAACTTCATCCTCAAACCTCACCTGGTGAACAAATCTGGACATAAGCTACACCTCAGTGATAACAACATCCTACCTGGGGGTGAGCCGTCTGCTGAGTTCCTGATGAACGTTAGTCACTGTCGGCGCCTCATTGTAGTGATGTCACACGCCTACCTAGAACAGGACTGGTGCTGTAACAACTTTAGACAGGGCCTTCTGCACCTGCTGGAGCTGTCCCAGAggcccatcatcatcatcacattgGAGGGTCAGGTCAAACTCATGAGACCCGATGTGGTCCAGCAACTCAGAGAACACCGACACAAACTCACCTTGCTCACCTGGTCGGGATCACACTCCATGCTGCCGTCGTCAGTGTTCTGGAAGGAGTTGGCCCTGGCCATGCCTCATAGGGTTGTGTTCCACAGCGACACGGCAGGGGACCCCCAGACTCTCTTCCAAGACGATAAGGACCCCATGCTCACCCTCAACCCAGACTACCTGGACTGTCGCCCTGACCCTGTTGGAGACCTGGgcCTTCATCTCCCAGTCTACAAGGCACTGGCATCCAGAGCCCCTGTGCTGCCTATGTTCCCCTCGGTCCCTGCATCCCTGACTGAGTCCAAACTCTCGGATATAGATGTATCGGACCTGGGATCGCGCAACTACGGAGCTCGCAATGACTTCTACTGCCTGGTTACAGAGGACAACATCTAAAAAAGACTGTAGCTTCTGAAGAAAAAAGGAGAACAAGATCTCCAACTTCTACTCTTCACTCTTCACTTCAGTCTGAATGTAAAACAGGTTCTCTCACCAACACTATCTACAACTTCCTGATGTTTCCATATTCAAGCAAGTGTtacatttaatatatttttttttaaagtgaataATTTTGTTCTTGGAAcaagtttgatttgatctgttTATTGAGATTTGTCCATATTTGAAACTTttcacatatacactgagtggacaaaacattaggaacacctgctctctctatccacgacatagactgaccaggtgaatccaggtgaaagctatgatcccttattgatgtcacttgttcaatccacttccagcagtgta

Function

symbol description
sigirr Acts upstream of or within negative regulation of inflammatory response. Located in cell surface. Is expressed in brain; gill; integument; liver; and pleuroperitoneal region. Orthologous to human SIGIRR (single Ig and TIR domain containing).

NR:

description
single Ig IL-1-related receptor

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K05169 SIGIRR; single Ig IL-1R-related molecule

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961133.1 False 2037 mRNA 0.48 9 100638574 100655606
XM_036961124.1 True 2023 mRNA 0.48 9 100638578 100655606

Neighbor

gene id symbol gene type direction distance location
LOC110501156 LOC106567469 coding upstream 194338 100438486 ~ 100444236 (+)
LOC118936889 NA coding upstream 219400 100417074 ~ 100419174 (+)
LOC110501220 NA coding upstream 286628 100342550 ~ 100351946 (+)
slc5a12 slc5a12 coding upstream 429351 100177192 ~ 100209223 (+)
LOC110500984 LOC106584750 coding upstream 497998 100133134 ~ 100140576 (+)
LOC110502612 LOC106584763 coding downstream 129925 100785531 ~ 100848341 (+)
LOC118936893 NA coding downstream 192568 100848174 ~ 100860603 (+)
LOC110501031 LOC106592222 coding downstream 273762 100929368 ~ 100964786 (+)
best1 LOC102229874 coding downstream 689679 101345285 ~ 101371174 (+)
LOC110516669 LOC106590745 coding downstream 979024 101634630 ~ 101695484 (+)
G211865 NA non-coding upstream 898 100637372 ~ 100637676 (+)
G211861 NA non-coding upstream 5523 100620844 ~ 100633051 (+)
G211863 NA non-coding upstream 9420 100621406 ~ 100629154 (+)
G211862 NA non-coding upstream 18370 100618772 ~ 100620204 (+)
G211859 NA non-coding upstream 20890 100596314 ~ 100617684 (+)
G211974 NA non-coding downstream 7145 100662751 ~ 100662967 (+)
G212009 NA non-coding downstream 71795 100727401 ~ 100729565 (+)
G212016 NA non-coding downstream 81692 100737298 ~ 100742133 (+)
G212019 NA non-coding downstream 107157 100762763 ~ 100765529 (+)
G212031 NA non-coding downstream 129347 100784953 ~ 100785344 (+)
G211809 LOC107574289 other upstream 170417 100467678 ~ 100468157 (+)
G211779 NA other upstream 176593 100459657 ~ 100461981 (+)
LOC110500919 LOC106584740 other upstream 738697 99896619 ~ 99899881 (+)
LOC110502581 LOC106561777 other upstream 824199 99777695 ~ 99818794 (+)
G210983 LOC106561766 other upstream 916591 99720179 ~ 99721983 (+)
G212656 NA other downstream 826805 101482181 ~ 101486796 (+)
G212674 NA other downstream 854154 101509760 ~ 101516104 (+)
G212690 NA other downstream 898779 101554385 ~ 101561158 (+)
G212863 NA other downstream 1087293 101742899 ~ 101745974 (+)
G213051 NA other downstream 1521803 102177409 ~ 102177918 (+)

Expression


Co-expression Network