LOC110501260


Basic Information

Item Value
gene id LOC110501260
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 101306077 ~ 101310210 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039303.1
agtagtgcactatatagggaatagagtgccagtgGGGACACAACCGTGTGTCTGTAGCTGCCATTCtgacctctccatctcctcttagACAACCTACAGGGGTGTCAAAAACCCCCAAGCAGTTGAGAGAAATAAAAAGAataaggagatggagaaacaaGAGATGAGACCGTCTccacctggaggaggaggaggagggctgaagGTAGGCTAAAGATGGACATGGAGAGATCCTGGAAGTCTCAATCTAGACTGAGGTTCAGCTAACAACATGAAGAGTGTTGGTACCAGTTGACTTGAAAAGGCTTTTTTTGGGTGTTGGCCCTTCTACtacattttttaatattt
>XR_002470198.2
agtagtgcactatatagggaatagagtgccagtgGGGACACAACCGTGTGTCTGTAGCTGCCATTCtgacctctccatctcctcttagACAACCTACAGGGGTGTCAAAAACCCCCAAGCAGTTGAGAGAAATAAAAAGAataaggagatggagaaacaaGAGATGAGACCGTCTccacctggaggaggaggaggagggctgaagGTAGGCTAAAGATGGACATGGAGAGATCCTGGAAGTCTCAATCTAGACTGAGGTTCAGCTAACAACATGAAGAGTGTTGGTACCAGTTGACTTGAAAAGGCTTTTTTTGGGTGTTGGCCCTTCTACtacattttttaatattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039303.1 False 348 mRNA 0.45 2 101306077 101308371
XR_002470198.2 True 348 mRNA 0.45 2 101306077 101310210

Neighbor

gene id symbol gene type direction distance location
LOC118944189 NA coding downstream 10314 101295573 ~ 101295763 (-)
LOC110502639 LOC106592222 coding downstream 85652 101182219 ~ 101220425 (-)
LOC110501204 LOC106591208 coding downstream 127717 101175917 ~ 101178360 (-)
LOC110502635 LOC106561817 coding downstream 135920 101169439 ~ 101170157 (-)
LOC110502631 LOC106592148 coding downstream 152308 100976119 ~ 101191014 (-)
LOC110501267 LOC106584791 coding upstream 8786 101318996 ~ 101343789 (-)
fth1b frih coding upstream 64281 101374491 ~ 101393565 (-)
incenp inceb coding upstream 83814 101394024 ~ 101408837 (-)
pgghg pgghg coding upstream 104102 101414312 ~ 101450164 (-)
LOC110501253 LOC106584787 coding upstream 171932 101482142 ~ 101553750 (-)
G212480 NA non-coding downstream 41565 101246606 ~ 101264512 (-)
G212433 NA non-coding downstream 82367 101157843 ~ 101223710 (-)
G212432 NA non-coding downstream 83550 101156710 ~ 101222527 (-)
G212428 NA non-coding downstream 89304 101150721 ~ 101216773 (-)
G212419 NA non-coding downstream 192370 101110670 ~ 101113707 (-)
G212580 NA non-coding upstream 205 101310415 ~ 101311871 (-)
G212594 NA non-coding upstream 46063 101356273 ~ 101357366 (-)
G212634 NA non-coding upstream 147069 101457279 ~ 101457709 (-)
G212638 NA non-coding upstream 148667 101458877 ~ 101461847 (-)
pkp3a pkp3 other downstream 591824 100662972 ~ 100716213 (-)
LOC110502607 ano5 other downstream 826287 100461545 ~ 100543552 (-)
G211904 LOC100136012 other downstream 850644 100455149 ~ 100455433 (-)
LOC110500995 LOC106561801 other downstream 1146122 100155072 ~ 100161971 (-)
G212829 LOC106613263 other upstream 402028 101712238 ~ 101712847 (-)
G212836 NA other upstream 409157 101719367 ~ 101719732 (-)
LOC110517830 LOC105018063 other upstream 432805 101743015 ~ 101746551 (-)
G213475 NA other upstream 1075919 102386129 ~ 102531578 (-)
G214030 NA other upstream 1509158 102819368 ~ 102819829 (-)

Expression


Co-expression Network