best1 (LOC102229874)


Basic Information

Item Value
gene id best1
gene name LOC102229874
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 101345285 ~ 101371174 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961196.1
cagccagccacctctccatccatccacctatccatccatccatccacctctccatccagctctccatccatccagccagcctGGCCAGGGAAGGGTAGTGATGACGGTGACGTACTCGCGGAGGGTTGCTGACGCGGGGCTAGGGACCTTCTCCCATCTGCTCCTCCGATGGAAGGGGAGCATCTACAAGCTGCTGTGGAGAGAACTGATCATCTTCACCACACTGTACTACTCCTTCAGCATCATATACAGGTTTGTGTTGAATGAGGGTCAGAAGAGGCTGTTTGAGAAGCTGGCCATCTACTGTGACCGGTACGCAGAACTCATCCCTGTGTCCTTCGTATTGGGTTTTTATGTGACCCTGGTGGTGTCTCGGTGGTGGGGTCAGTTTGAGAGTGTTCCCTGGCCGGACCGGTTGGGTGCGCTGGTGGGCGCTCACGTCCGTGGTACCGATGAGATCGCCAGGCTGACCCGCCGCACCCTGATGCGGTACGCCAACCTGTCCGGCGTGCTCATCTACCGATCGGTCAGCACGGCAGTCTACAAGAGGTTCCCCACTATGAAGCACTTGGTGCAGGCAGgcCTGATGACAGCAGAGGAACATAGGCAGTTGGAGGAGTTGCCCTCACCTCATAACAAGTTCTGGGTTCCTTGTATGTGGTTTGTTAACCTGGCACTGAGGGCCCGCACCGAGGGACGCATCAACAATGATGTGGCGCTGTCAGCCATTCTCAATGAATTAAACACATTGCGGACACAGTGTATGAAGCTATACAGTTATGATTGGATCAGCCTACCCCTTGtgtacacccagGTGGTGACAGTGGCGGTCTACAGTTTCTTCCTGGCGTGTCTGATTGGTCGACAGTTCTTAGACCCCGCCCAGGGCTACGCTGGTCATGACATCGACTTCTACCTGCCTGTCTTCACCCTGCTACAGTTCTTCTTCTACGTGGGCTGGCTcaagGTGGCAGAACAACTGATAAACCCGTTTGGGGAAGACGACGATGACTTTGAAACCAACTATCTGGTTGATCGTAATCTACAGGTGTCCCTGCTGTCTGTGGATGAGATGTACGACACTATCCCATTGGTAGAGAAGGATAAGTACTGGAACGAATCAGAGCCCCAGCCTCCATACACTGCAGCCAGCGCGGAGCATCGCAAACCATCCTTCATGGGCTCTGCTCTGGACATCAGtGTTCCCAAAGAGGAGATGGAGTTCCAGTCCAACCTGGAGCAGATCAAGGAGCATGAGGAGGCCAaccactctactcctctcctgGGGGGTCTGAGTCGCCTCCTGGGGGTTCAGTCCCCCGTCTTCCCccgctcctccacctcctcccggGTTTCTCTCCTGCGCCGGCGCCCAGGGGCTCCATTCAGCCGCTTCCCCCCCTTCCTGCACTCCGAGGGGGACCCCTCAACACCGAGCCACGGCCCTGGTCCCCGCCACGACTCCAGCCACCCGGACTACGCCTTCTCCTCCATGCCGCTGTATGAGAGGTCCGGCTTCTATAGCTGTCCCCAGACCCCCATCCACTGTGTTCCCCCCGCTATGCCTCGTCCACGGCCCACCCGAGGAACTTACGCCTGGGATCGCAGTTCCAGCTCGCTGGCTCCTCCGATGGTTGGCTCTGGAGGTCTACTGCCCCCTGATACTCCAGGTCATAtgctccctccaccctcctctgcCTTCCCCTGGCtgagtgaggagggagagggtcctTGTGTTCCAGCCTTCTCCTTTCCTGACCCTGGCAACCTTCCGGAACTCTGCCCCATATCAAAGCTCCGGCCCGGGCAAGGCCTGCTGTCTCGACGGCCTCCGCCTCCACGCCTCTCACTGGATAACACATCGTTGGCCGAGGGCCTGCAGCCTGGACCCATCAGCCCACGGGGagtgggaggtggaggggagcGGGAGTTCTCCTTTACCCCTCCCTCTCGCACCCCAGCTACCAATCCCAACAGCTCCTCCTCTAGTATCAATGCCACCAGCACTATCAACACCACCAACCCTAACACCACTACTCCAGCCAACGTCTTGAGTGGTACCAACCCCACTTCTACAACAAACTTCTGCAATGGTACCAACTCCAACACCACTACTACGTCTAACGTCTGCAATGGTACCAACCCCAACACCTTTTGTAACCATGCCAACTTCAACAGCACAAGAGCAGCAGGTATCAACAGTGGAACCAATGGTGGTCTAAGCAACAACGTCGTGAACACCATTTCCATTTCTGGATCCTCTCAGCAAGAAGCCAATCAGCATCAAAACTCGCCCAATGATTCAGGGATTTCATTGGCTGAGGGGGGCCCTCACTGGCTGGGAGCTCTGAACAAGGCCCCTGGGGGGCGGGAGCAGGACTGAAGAAGGAGGGAGATGATTGGACAAGGCCCCTGGGGGATGGGAGCGTGGTTCGACAGACTCTGGGTTCAGAAGTAGTGTAAACCTACGCCGTACGCACATCTTTCTTTCAAACTGGAGGGTTCCAGCACTTCTGACCAGTGGGAGTCTTTCTAGGCCATCCATCTGACCAGTGGTAGTCTTTCTAGGACATCCATCTGACCAGTGGTAGTCTTTCTAGGCCATCCATCTGACCAGTGGTAGTCTTTCTAGGCCATCCATCTGAGCAGTGGTAGTCTTTCTAGGCCATCCATCTGAGCAGTGGTAGTCTTTCTAGGCCATCCATCTGACCAGTGGTAGTCTTTTGCGAAGCCTGGATGTCCAAGGCTAGACCAGCGTAGAGGCTgcttctgaaatgtttattggaATCCCACAGAGTGGAGAGGTTGCTAATATGACATTTCTTCTTCATGCTATTCCAGCTAGTAAACCAGTACGAAATCTACTGAAGAAAGACTCCTTTGTTTGCTGAATCTCAGAGGCCTACGGACTGGAGGCCTACGGACTGGAGGCCTACGGACTGGAGGCCTACGTACTATTCTCTCCTGATTCCAGGattcttccaaccaggatttctggaaaattgtatttgtcacgtgcaccaaatacaacagacttttccgtgaaatgcttactgacgagcctttaaccaacaatgcagtttttttaAAGTAAGTATGAACAATTTGCTCAGTAAACTAAAAGAAAAATAACATTAACGAGGCTACACACTAGGGGTACCGATGTGCCGgggtagtcgaggtaattgaggaggatacactgcattcggaaagtattcagatcccttgactttttccacattttgttacgttacagccttattctaa

Function

NR:

description
bestrophin-1-like

GO: NA

KEGG:

id description
K13878 BEST1, VMD2; bestrophin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961196.1 True 3267 mRNA 0.54 9 101345285 101371174

Neighbor

gene id symbol gene type direction distance location
LOC110501031 LOC106592222 coding upstream 380499 100929368 ~ 100964786 (+)
LOC118936893 NA coding upstream 486023 100848174 ~ 100860603 (+)
LOC110502612 LOC106584763 coding upstream 496944 100785531 ~ 100848341 (+)
sigirr sigirr coding upstream 689679 100638574 ~ 100655606 (+)
LOC110501156 LOC106567469 coding upstream 901049 100438486 ~ 100444236 (+)
LOC110516669 LOC106590745 coding downstream 263456 101634630 ~ 101695484 (+)
LOC110502669 LOC107698134 coding downstream 666864 102038038 ~ 102167821 (+)
LOC110501421 LOC106561865 coding downstream 813185 102184359 ~ 102238260 (+)
LOC110501429 LOC106561864 coding downstream 890943 102262117 ~ 102278883 (+)
LOC110501451 LOC106561861 coding downstream 936323 102307497 ~ 102314434 (+)
G212526 NA non-coding upstream 1162 101343000 ~ 101344123 (+)
G212513 NA non-coding upstream 20008 101323355 ~ 101325277 (+)
G212512 NA non-coding upstream 24078 101319004 ~ 101321207 (+)
G212507 NA non-coding upstream 34608 101308272 ~ 101310677 (+)
G212464 NA non-coding upstream 58748 101238488 ~ 101286537 (+)
G212496 frih non-coding downstream 2979 101374153 ~ 101380327 (+)
G212549 NA non-coding downstream 9914 101381088 ~ 101382002 (+)
G212550 NA non-coding downstream 12134 101383308 ~ 101383662 (+)
G212498 NA non-coding downstream 15378 101386552 ~ 101387956 (+)
G212559 NA non-coding downstream 43140 101414314 ~ 101416539 (+)
G211809 LOC107574289 other upstream 877128 100467678 ~ 100468157 (+)
G211779 NA other upstream 883304 100459657 ~ 100461981 (+)
LOC110500919 LOC106584740 other upstream 1445408 99896619 ~ 99899881 (+)
LOC110502581 LOC106561777 other upstream 1530910 99777695 ~ 99818794 (+)
G210983 LOC106561766 other upstream 1623302 99720179 ~ 99721983 (+)
G212656 NA other downstream 111237 101482181 ~ 101486796 (+)
G212674 NA other downstream 138586 101509760 ~ 101516104 (+)
G212690 NA other downstream 183211 101554385 ~ 101561158 (+)
G212863 NA other downstream 371725 101742899 ~ 101745974 (+)
G213051 NA other downstream 806235 102177409 ~ 102177918 (+)

Expression


Co-expression Network