XLOC_020751 (mhc1uma)


Basic Information

Item Value
gene id XLOC_020751
gene name mhc1uma
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 3910610 ~ 3914222 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040925
TGGCAATTTAGGTGTGGTCAAAAGATTTACATTTCTCTTTGACGACAGCTGCTAAATGAAGTCAGTCAAGATTATGGCTTTATGTCCATAAtgaagtttataatttttttcttcaactTGCCTTTTGTTTACTCAGagctACACACATTTGTGGTTACATACACAGCAATGGGAAACCAGACGTTTTTTGCAGCAGCGACACTGGATGGACAACAGATTGGTCATTATGACAAAAATACGAAGACACTGGTTCCAAAACAGGACTGGAATGAGCAAATTAAATCTAAAACACCTTGGAAAGTAGACACATTGATTGAAACGGTGCAAAGGACATACAACAACAATATGCATGACCTAATTGAGCAATTTCCTCAGTCAAATGGTGCTCATACATATCAGGGGAGGCATGGATGTTCCTGGGAAGATAAAACCAATTACCATGATGAGTTTCATGATTATGCATATGACGGAGATGATTTTATCACACTAGATGTGAAGAAAATCAAATACAGAGCATCTGTATCAAAGGCAAAATATATAGTGAAGAAGTGGAACAATGACAGAGAACAGAATAAAACACTAAAAGAGTACTATAAACTTGGATGTATTTACTGGCTGATAGAGTTCTTAGTTTTCACTAAAAATGCCTTTGGAGGAACAGCGCCGAAAATGTTTCTGTTGCAGAAGAGCCCAAATTCAGATGTGAAATGTCATGTCACAGGGTTTTACTCCAATAACATTGTCATATTGTGGATGAAGAATGGACAGGAAGTAAGCAATTCAGCTTTGTTAAAGTCTGGAGAAATTTTGCCAAATGAAGATGGAACCTTCCAGAGAACTGTAACTCTAAGAGTTTCTTTACAATACTGGAGGAAGGAGCAGTACACTTGTGTGGTGAGGTACATGGAAAAGACCATTCGGAGGAATTTGACTGAGGAGGAGATCAAGAGTAACTACAGTGAGATGAGTATTACTGCATCAGATTCATCAACATCAATTCTTGTACCTATTATTGTGGTAGTTTTGGTTGTATCACTGATTTTGTGGTGGATGAGTTGTCACCAGAATTGCAGACTGGGACAGTGTTTTCACCTGGAAAATGCCAACTAAGCTGCGGCGATTGACTACAAGAAGCGGTGT
>TCONS_00040928
GTCAGTCAAGATTATGGCTTTATGTCCATAAtgaagtttataatttttttcttcaactTGCCTTTTGTTTACTCAGGTGCTCATACATATCAGGGGAGGCATGGATGTTCCTGGGAAGATAAAACCAATTACCATGATGAGTTTCATGATTATGCATATGACGGAGATGATTTTATCACACTAGATGTGAAGAAAATCAAATACAGAGCATCTGTATCAAAGGCAAAATATATAGTGAAGAAGTGGAACAATGACAGAGAACAGAATAAAACACTAAAAGAGTACTATAAACTTGGATGTATTTACTGGCTGATAGAGTTCTTAGTTTTCACTAAAAATGCCTTTGGAGGAACAGCGCCGAAAATGTTTCTGTTGCAGAAGAGCCCAAATTCAGATGTGAAATGTCATGTCACAGGGTTTTACTCCAATAACATTGTCATATTGTGGATGAAGAATGGACAGGAAGTAAGCAATTCAGCTTTGTTAAAGTCTGGAGAAATTTTGCCAAATGAAGATGGAACCTTCCAGAGAACTGTAACTCTAAGAGTTTCTTTACAATACTGGAGGAAGGAGCAGTACACTTGTGTGGTGAGGTACATGGAAAAGACCATTCGGAGGAATTTGACTGAGGAGGAGATCAAGAGTAACTACAGTGAGATGAGTATTACTGCATCAGATTCATCAACATCAATTCTTGTACCTATTATTGTGGTAGTTTTGGTTGTATCACTGATTTTGTGGTGGATGAGTTGTCACCAGAATTGCAGACTGGGACAGTGTTTTCACCTGGAAAATGCCAACTAAGCT
>TCONS_00040927
GTCAGTCAAGATTATGGCTTTATGTCCATAAtgaagtttataatttttttcttcaactTGCCTTTTGTTTACTCAGGTGCTCATACATATCAGGGGAGGCATGGATGTTCCTGGGAAGATAAAACCAATTACCATGATGAGTTTCATGATTATGCATATGACGGAGATGATTTTATCACACTAGATGTGAAGAAAATCAAATACAGAGCATCTGTATCAAAGGCAAAATATATAGTGAAGAAGTGGAACAATGACAGAGAACAGAATAAAACACTAAAAGAGTACTATAAACTTGGATGTATTTACTGGCTGATAGAGTTCTTAGTTTTCACTAAAAATGCCTTTGGAGGAACAGCGCCGAAAATGTTTCTGTTGCAGAAGAGCCCAAATTCAGATGTGAAATGTCATGTCACAGGGTTTTACTCCAATAACATTGTCATATTGTGGATGAAGAATGGACAGGAAGTAAGCAATTCAGCTTTGTTAAAGTCTGGAGAAATTTTGCCAAATGAAGATGGAACCTTCCAGAGAACTGTAACTCTAAGAGTTTCTTTACAATACTGGAGGAAGGAGCAGTACACTTGTGTGGTGAGGTACATGGAAAAGACCATTCGGAGGAATTTGACTGAGGAGGAGATCAAGAGTAACTACAGTGAGATGAGTATTACTGCATATTCATCAACATCAATTCTTGTACCTATTATTGTGGTAGTTTTGGTTGTATCACTGATTTTGTGGTGGATGAGTTGTCACCAGAATTGCAGACTGGGACAGTGTTTTCACCTGGAAAATGCCAACTAAGCT
>TCONS_00040926
GTCAGTCAAGATTATGGCTTTATGTCCATAAtgaagtttataatttttttcttcaactTGCCTTTTGTTTACTCAGagctACACACATTTGTGGTTACATACACAGCAATGGGAAACCAGACGTTTTTTGCAGCAGCGACACTGGATGGACAACAGATTGGTCATTATGACAAAAATACGAAGACACTGGTTCCAAAACAGGACTGGAATGAGCAAATTAAATCTAAAACACCTTGGAAAGTAGACACATTGATTGAAACGGTGCAAAGGACATACAACAACAATATGCATGACCTAATTGAGCAATTTCCTCAGTCAAATGGTGCTCATACATATCAGGGGAGGCATGGATGTTCCTGGGAAGATAAAACCAATTACCATGATGAGTTTCATGATTATGCATATGACGGAGATGATTTTATCACACTAGATGTGAAGAAAATCAAATACAGAGCATCTGTATCAAAGGCAAAATATATAGTGAAGAAGTGGAACAATGACAGAGAACAGAATAAAACACTAAAAGAGTACTATAAACTTGGATGTATTTACTGGCTGATAGAGTTCTTAGTTTTCACTAAAAATGCCTTTGGAGGAACAGCGCCGAAAATGTTTCTGTTGCAGAAGAGCCCAAATTCAGATGTGAAATGTCATGTCACAGGGTTTTACTCCAATAACATTGTCATATTGTGGATGAAGAATGGACAGGAAGTAAGCAATTCAGCTTTGTTAAAGTCTGGAGAAATTTTGCCAAATGAAGATGGAACCTTCCAGAGAACTGTAACTCTAAGAGTTTCTTTACAATACTGGAGGAAGGAGCAGTACACTTGTGTGGTGAGGTACATGGAAAAGACCATTCGGAGGAATTTGACTGAGGAGGAGATCAAGAGTAACTACAGTGAGATGAGTATTACTGCATCAGATTCATCAACATCAATTCTTGTACCTATTATTGTGGTAGTTTTGGTTGTATCACTGATTTTGTGGTGGATGAGTTGTCACCAGAAACTGGGACAGTGTTTTCACCTGGAAAATGCCAACTAAGCT
>TCONS_00040929
TGGCAATTTAGGTGTGGTCAAAAGATTTACATTTCTCTTTGACGACAGCTGCTAAATGAAGTCAGTCAAGATTATGGCTTTATGTCCATAAtgaagtttataatttttttcttcaactTGCCTTTTGTTTACTCAGagctACACACATTTGTGGTTACATACACAGCAATGGGAAACCAGACGTTTTTTGCAGCAGCGACACTGGATGGACAACAGATTGGTCATTATGACAAAAATACGAAGACACTGGTTCCAAAACAGGACTGGAATGAGCAAATTAAATCTAAAACACCTTGGAAAGTAGACACATTGATTGAAACGGTGCAAAGGACATACAACAACAATATGCATGACCTAATTGAGCAATTTCCTCAGTCAAATGGTGCTCATACATATCAGGGGAGGCATGGATGTTCCTGGGAAGATAAAACCAATTACCATGATGAGTTTCATGATTATGCATATGACGGAGATGATTTTATCACACTAGATGTGAAGAAAATCAAATACAGAGCATCTGTATCAAAGGCAAAATATATAGTGAAGAAGTGGAACAATGACAGAGAACAGAATAAAACACTAAAAGAGTACTATAAACTTGGATGTATTTACTGGCTGATAGAGTTCTTAGTTTTCACTAAAAATGCCTTTGGAGGAACAGCGCCGAAAATGTTTCTGTTGCAGAAGAGCCCAAATTCAGATGTGAAATGTCATGTCACAGGGTTTTACTCCAATAACATTGTCATATTGTGGATGAAGAATGGACAGGAAGTAAGCAATTCAGCTTTGTTAAAGTCTGGAGAAATTTTGCCAAATGAAGATGGAACCTTCCAGAGAACTGTAACTCTAAGAGTTTCTTTACAATACTGGAGGAAGGAGCAGTACACTTGTGTGGTGAGGTACATGGAAAAGACCATTCGGAGGAATTTGACTGAGGAGGAGATCAAGAGTAACTACAGTGAGATGAGTATTACTGCATGTAGGTTGGATTAATAACAGAAggcaactattaaaaaaaaaaacaggatggatttgctttttattctttctgtttttgttttgggtttCTTTGTTCAGGCATTTTGGCTGTCATTATTAATATGTATGCATTTCATTTTTCAGCAGATTCATCAACATCAATTCTTGTACCTATTATTGTGGTAGTTTTGGTTGTATCACTGATTTTGTGGTGGATGAGTTGTCACCAGAAGTAAGTATACAGGCCTGTTATGAGATAATTCTTATCAAGGGTGCAAGTATTTTTGTTTGTAACAGTGAAAAAAAACAGTAACAGTGAACCCACTGGTGTTTAAttcacatgctttttttttgtctcttaaaaatgatttcaaataaatactattgGTCAGTTGCAGACTGGGACAGTGTTTTCACCTGGAAAATGCCAACTAAGCT

Function

symbol description
mhc1uma Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in asthma; hepatitis C; and occupational asthma. Orthologous to several human genes including HLA-E (major histocompatibility complex, class I, E); HLA-F (major histocompatibility complex, class I, F); and HLA-G (major histocompatibility complex, class I, G).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-140820-1 Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in asthma; hepatitis C; and occupational asthma. Orthologous to several human genes including HLA-E (major histocompatibility complex, class I, E); HLA-F (major histocompatibility complex, class I, F); and HLA-G (major histocompatibility complex, class I, G).

Ensembl:

ensembl_id ENSDARG00000039164

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040925 False 1140 mRNA 0.38 7 3910610 3914222
TCONS_00040928 False 807 mRNA 0.38 5 3910731 3914162
TCONS_00040927 False 804 mRNA 0.37 5 3910731 3914162
TCONS_00040926 False 1047 mRNA 0.38 6 3910731 3914162
TCONS_00040929 True 1416 mRNA 0.36 4 3910731 3914222

Neighbor

gene id symbol gene type direction distance location
XLOC_020750 NA coding downstream 23926 3883607 ~ 3886684 (-)
XLOC_020749 NA coding downstream 169326 3740586 ~ 3741284 (-)
XLOC_020748 ptprsa coding downstream 229885 3389347 ~ 3680725 (-)
XLOC_020747 NA coding downstream 562726 3347513 ~ 3347884 (-)
XLOC_020746 tbxa2r coding downstream 565997 3336723 ~ 3344613 (-)
XLOC_020752 CU074310.1 coding upstream 397581 4311803 ~ 4313118 (-)
XLOC_020753 kdm4b coding upstream 399383 4313605 ~ 4407871 (-)
XLOC_020754 uhrf1 coding upstream 494421 4408643 ~ 4439311 (-)
XLOC_020755 fbn2b coding upstream 610145 4524367 ~ 4649238 (-)
XLOC_020756 NA coding upstream 818785 4733007 ~ 4735337 (-)
XLOC_020738 NA non-coding downstream 1018064 2889663 ~ 2892546 (-)
XLOC_020736 NA non-coding downstream 1082524 2814463 ~ 2828086 (-)
XLOC_020765 NA non-coding upstream 938840 4853062 ~ 4853815 (-)
XLOC_020777 CR936300.1 non-coding upstream 1226308 5140530 ~ 5145022 (-)
XLOC_020780 NA non-coding upstream 1353301 5267523 ~ 5274962 (-)

Expression


Co-expression Network