LOC110512506 (LOC106590753)


Basic Information

Item Value
gene id LOC110512506
gene name LOC106590753
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 101560267 ~ 101595386 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961083.1
TGCGACCGAGAAGAACGAAAGTGCCAGAGAGGGGACACAGCATTCAATGACAGATGTTGAACAGTTTTCACCTGGATAAAGTGATTGTTTTTTGGACAAATACGTTACTATCGAACAACAGGCAATTGCCTTACAACAAGAATAAACGTGTGAGGAAGGGAATGGTGAAGATGTCTTCAAGAACAGAAAGACAATCAACTTGTTGACAGTCAGTCAAGTGTTGAACTATATGAAAACAAACAGATCGCTCAGGGAACGACAAGGGGACAACAACTACCAATAGCTGACATTTTTCAAAGACTGTGGTATTACCAGCACTTTAGATAACTAGTTGTGAACTTTTGCAGAGCTTTCTGTCTTTTCAGTCGACTGTCTCTCAGATAGTGGCTAGCTATGTTTCCTCTAGATTCTACGTGGAACATTTCCTTTGCAGGTTGTGGTTTCTTGGGGATCTATCATATTGGTGTAGCGAGTTGTCTACTGGAACAGTGTCCTTTTCTAGTCCACAACGCCCGCCACATATACGGGGCATCGGCAGGGGCGCTCACCGCATCTGCGCTGGTCACCGGAGCGTGTTTAGGTGAGGCAGGCGCCAACATCATTGATGTGGCTAAGGATGCCCGGAAGCGTTTCCTGGGTCCTATGCACCCGTCTTTCAACCTGGTCAAGATCATGCGTAACATGCTGTATAAAACCCTGCCACCCGATTCCCACCACAGAGCCACAGGGAGGCTGGGCATATCACTGACCAGGGTGACCGACGGAGAGAATGTCTTGGTGTCCCACTTCAACAGCAAGGAGGAGCTGGTGCAGGCCTGTGTCTGCAGTGCCTACATCCCTGTGTACTGTGGACTGATCCCCCCGACACTGCAGGGTGTGcGTTACGTGGACGGTGGTATCAGTGATAATCTGCCTCAGTATGAACTGAAGAATACCATCACTGTGTCTCCGTTCTCTGGAGAGAGTGACATCTGCCCTAGAGACCGATCCACCAACATGCATGAACTACGATTCACCAACACCTCCATCCAGTTTACACTCACCAACCTCTACAGAGTGTCCAGAGCTCTGTTTCCCCCTGagccacagGTTATGAAGACCATGTGTAAACAGGGATATAAAGACGCCCTTCACTTCCTGAAGAAGAACGGACTACTGAATCAACCAGGACCCCACAGACCTCTGATAGCTGACGGCGAGGATGACGAAGATGACATCAtgaatgaggatgatgatgaggaagagCATGAGGAGCATCATGTAGAGAACGAGATCAGACCCAGCGAGGATGGGGTAGTGGTAAACCCCTCCCAATCCAAATCCGCCATTGAGGATCACATCTTTGAACATCTGCCACCCAGACTACACAAAGctctggtTGAAGCCTGCAAGGAGAGATACAGTCTGGTCCAGTCGCTAAGCAACCTGCTGCCAGTCAGGATGGTGACGGCTATGATGCTTCCCTATACCCTTCCCCTGGAGTCTGCTCTGTCCATGACTGTTAGaCTGTTAGAATGGCTGCCTGATGTGCAGGAGGACGTGGGATGGATCGGAGAACAAACGATTAAGATGCTACAGTGTGCTGTGACACGGGCCACCAAGACTGTGTCCAACAGGGTCTCTGCAAAgttttCCTACCAGTTGGAGCTGCGTCACTGCCAGTCCCTGCCTGCCCAGCTCATCCCTGCCAGCCTGCTCCCAAGATGGGTGAGTGGAGGCAGCTCCTCTATCCTGGATGTTATCAGTCGTTTGGACCAGTACCAAAGGCAGCTGCTGCCGGGCTTCTTCTGTGTTAACCTGGACCTCCAGGGTTCCTTCTACACCGGGGGTCCCACAGTCCCAGGAGGGTCCACCAGAGCTGGGGAAGGAGGACCAGGACCAGCCCTGTCTCTTACATCCCCCATCATAAACCCAGAGGAGGTAGAGGGGATGGGGCTGATGATGAGGAGGCTCAGTGAAAACCACAACTCTACTGCGGCTCTTCCAGCCTCACTATAGTAATATAATGTATGCCATTCAGGAGACACTGAGGGCcccctgggggggaggggggggtgaccATTTAGTATTACAGACAGATTCTAATAAAAGCCAGGTAGACAGGTAGAACAGGTATAACAGCCAGGTAGACACCTTCAAATTAAAGGGACAGTACACCAACGTGTGTTGTCTCATCATCGATGACACAGTGCCTTGTTCGCTAACATTTGATTCACTCACCTGCCCATTGGGATGCCGAGGATACCCAGGAACCTACAAGGAGCCGCTGATCTGCATCGTGTCAATGTGACTTttacaaaacataaaaaaatatattcaagtcattaagataataaacagtaaaaaGTCTTTACTGTTGACTGTTGATACCAAACATGTTCAAGGACTAGGGATGTTATCGATGAACCGGTTAGCCGGTTAGCCCGACCGAAAATACATTTCACCCgggtcatgcttatcggtctataggttCATTTGAATAATTTTGTGGAATTAAAATTGCCACGTGTGTATTTCCATTA

Function

NR:

description
patatin-like phospholipase domain-containing protein 2

GO: NA

KEGG:

id description
K16816 PNPLA2, ATGL; patatin-like phospholipase domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961083.1 True 2522 mRNA 0.49 9 101560267 101595386

Neighbor

gene id symbol gene type direction distance location
LOC110501253 LOC106584787 coding downstream 6517 101482142 ~ 101553750 (-)
LOC118944013 NA coding downstream 23513 101536030 ~ 101536754 (-)
pgghg pgghg coding downstream 110103 101414312 ~ 101450164 (-)
incenp inceb coding downstream 151430 101394024 ~ 101408837 (-)
fth1b frih coding downstream 166702 101374491 ~ 101393565 (-)
LOC118944014 NA coding upstream 106000 101701386 ~ 101703960 (-)
LOC118944015 NA coding upstream 110619 101706005 ~ 101706647 (-)
LOC110517830 LOC105018063 coding upstream 149882 101743015 ~ 101746551 (-)
LOC110501407 LOC106561868 coding upstream 317598 101912984 ~ 101916443 (-)
LOC110501416 LOC106561859 coding upstream 402413 101997799 ~ 102000087 (-)
G212739 NA non-coding downstream 3889 101554402 ~ 101556378 (-)
G212768 LOC106592832 non-coding downstream 38337 101521092 ~ 101521930 (-)
G212764 NA non-coding downstream 50529 101508773 ~ 101509738 (-)
G212747 NA non-coding downstream 83795 101476053 ~ 101476472 (-)
G212649 NA non-coding downstream 88152 101471827 ~ 101472115 (-)
G212784 NA non-coding upstream 2630 101598016 ~ 101598241 (-)
G212785 NA non-coding upstream 11407 101606793 ~ 101607517 (-)
G212786 NA non-coding upstream 13215 101608601 ~ 101608827 (-)
G212787 NA non-coding upstream 18101 101613487 ~ 101613690 (-)
G212788 NA non-coding upstream 18689 101614075 ~ 101614390 (-)
LOC110502631 LOC106592148 other downstream 380506 100976119 ~ 101191014 (-)
pkp3a pkp3 other downstream 846014 100662972 ~ 100716213 (-)
LOC110502607 ano5 other downstream 1080477 100461545 ~ 100543552 (-)
G211904 LOC100136012 other downstream 1104834 100455149 ~ 100455433 (-)
LOC110500995 LOC106561801 other downstream 1400312 100155072 ~ 100161971 (-)
G212829 LOC106613263 other upstream 116852 101712238 ~ 101712847 (-)
G212836 NA other upstream 123981 101719367 ~ 101719732 (-)
G213475 NA other upstream 790743 102386129 ~ 102531578 (-)
G214030 NA other upstream 1223982 102819368 ~ 102819829 (-)

Expression


Co-expression Network