LOC110516669 (LOC106590745)


Basic Information

Item Value
gene id LOC110516669
gene name LOC106590745
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 101634630 ~ 101695484 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961212.1
GCATTATAGACTAAAGAaagaaacacacaacaacaataacaacagcagCAGATGGACTGACTGGCACATCAGACAGACACATATCAACTCTCTGACGACCAGCCGGCGCCTCACATAAATGGCTGACAAGCAGATCAGttTGCCTGCCAAATTGATAAATGGTGGGATCGCAGGGCTGATCGGCGTGAGCTGTGTGTTTCccattgacctggccaagaccCGCCTGCAGAACCAGCAAAATGGATCACGACTCTACACCAGCATGTCCGACTGTCTTATCAAGACCATCCGCTCAGAGGGATACTTCGGGATGTACAGAGGGTCTGCGGTGAACTTAACCCTGGTCACTCCAGAGAAAGCCATCAAGCTAGCAGCAAATGACTTCTTCAGACAATACCTCTCCAAGGATGGtcagaaGCTCACCCTGGTCAAAGAGATGCTGGCGGGGTGTGGGGCAGGTACATGTCAGGTTATCGTCACGACTCCTATGGAGATGTTGAAGATTCAGCTTCAAGATGCTGGGAGAATTGAGGCCCAGAGGAAGCTGATGCCAGAGACGGTAGTACCGGGGACCGCGCCGACCAAGTCCCCCACCGCCATGCAACTGACCAGGGAACTGCTTAAGGAGAAGGGAATCGCTGGGCTGTACAAGGGCCTGGGGGCCACACTGCTCAGgGATGTTCCGTTCTCCATCATCTACTTCCCTCTGTTTGCCAACCTGAACGACCTGGGGAAGAGAGGAGCGGAGGGCCCCGCTCCGTTCTATGTCTCATTCCTGGCAGGCTGTCTGGCTGGCAGCACGGCCGCCGTGGCTGTCAACCCTGTAGATGTGATAAAGACCAGAATCCAGTCTATGAACAGAGGGAGTACAGAGGAAACCTACAGCGGGGTGACTGACTGTATCAGTAAAATCATGAAGAACGAGGGTCCCTCTGCGTTCCTGAAGGGGGCGTACTGCCGTGCCCTGGTCATCGCGCCCTTATTTGGTATCGCCCAGGTGGTCTACTTCTTCGGGGTGGGAGAATACATCCTCAGCTTCCTGCCTGGCAACTGAGAACATCAACCAATCGGATCTCTGCCTTTCCCTCTCTCACGACCACGTCACGCACAGCACACCGAAAGACACTGGGATCACCTCTCGTCATGAAATAAGGTTTTGATTGGTTGAACGACGATCGTTGTCGTCGGCGAGTTAAAGTATGACTACCACCCATTTAGGATAGTTTTTCCTTTGACCCCCTTTTGGCTTAAGAGCACCCCCTAGAGGCAACAACGTTGTGttcagcctcttccattgtcctTGTTGTGTTGAATGTAATGCTATGGTTGTGAGCACAGTAGTAAGAGTACTTAGGAGAGAGATGTGTTGATGGCAAAGCAACATTCCAGTGGAATTAATGCCACAAATACCATGTTCTCAAACGATGATGAttatcttatttttttttaatatacatatatttttgttttgaTATGGGCCGTGAATTACAGGGTAGATCTATTGTCTGAGTACATGGTAGTTATCTCCGTTAACCTCCATAGTGTCAGAATGATCATGCGAATGACAACTATTGCCTATAAATCACATTTAATATTAATGACTTATCTTGTAATAAtataacaatgtttt

Function

NR:

description
PREDICTED: mitochondrial glutamate carrier 1-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15107 SLC25A18_22, GC; solute carrier family 25 (mitochondrial glutamate transporter), member 18/22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961212.1 True 1630 mRNA 0.49 10 101634630 101695484

Neighbor

gene id symbol gene type direction distance location
best1 LOC102229874 coding upstream 263456 101345285 ~ 101371174 (+)
LOC110501031 LOC106592222 coding upstream 669844 100929368 ~ 100964786 (+)
LOC118936893 NA coding upstream 775368 100848174 ~ 100860603 (+)
LOC110502612 LOC106584763 coding upstream 786289 100785531 ~ 100848341 (+)
sigirr sigirr coding upstream 979024 100638574 ~ 100655606 (+)
LOC110502669 LOC107698134 coding downstream 342554 102038038 ~ 102167821 (+)
LOC110501421 LOC106561865 coding downstream 488875 102184359 ~ 102238260 (+)
LOC110501429 LOC106561864 coding downstream 566633 102262117 ~ 102278883 (+)
LOC110501451 LOC106561861 coding downstream 612013 102307497 ~ 102314434 (+)
LOC118936918 NA coding downstream 905134 102600618 ~ 102608333 (+)
G212715 NA non-coding upstream 21685 101611880 ~ 101612945 (+)
G212714 NA non-coding upstream 22779 101611448 ~ 101611851 (+)
G212711 NA non-coding upstream 27046 101606776 ~ 101607584 (+)
G212710 NA non-coding upstream 35231 101598717 ~ 101599399 (+)
G212705 NA non-coding upstream 44767 101585180 ~ 101589863 (+)
G212702 NA non-coding downstream 296 101695780 ~ 101706656 (+)
G212828 NA non-coding downstream 17083 101712567 ~ 101712857 (+)
G212834 NA non-coding downstream 21505 101716989 ~ 101717278 (+)
G212839 NA non-coding downstream 25616 101721100 ~ 101721363 (+)
G212845 NA non-coding downstream 29506 101724990 ~ 101725998 (+)
G212690 NA other upstream 78260 101554385 ~ 101561158 (+)
G212674 NA other upstream 118526 101509760 ~ 101516104 (+)
G212656 NA other upstream 147834 101482181 ~ 101486796 (+)
G211809 LOC107574289 other upstream 1166473 100467678 ~ 100468157 (+)
G211779 NA other upstream 1172649 100459657 ~ 100461981 (+)
G212863 NA other downstream 47415 101742899 ~ 101745974 (+)
G213051 NA other downstream 481925 102177409 ~ 102177918 (+)
G213055 NA other downstream 542819 102238303 ~ 102239540 (+)
G213185 NA other downstream 818723 102514207 ~ 102516302 (+)
G213221 NA other downstream 900047 102595531 ~ 102599866 (+)

Expression


Co-expression Network