LOC110502669 (LOC107698134)


Basic Information

Item Value
gene id LOC110502669
gene name LOC107698134
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 102038038 ~ 102167821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934561.1
ATGGAGAAGGGAGCCGGAGGGAAGTGGGGCAGCGGCTCCTTTAAACGAGTTTCCATCAAACGCTCGGCATCCAGTGCCTCCAATAAGGCCCAGAAAGCGTGGATCGAGAGGATCTTTCAGAAGAGAGAATGTATTCACATATTCCCCAGCAAGGACCCTACAAGATGTTCGTGTGGTCAGCTGATAACGCAGCACGTGGTGATCCCGCTGGGCGCTCTGACCAACAAGCTGTCGGAAGAGAACCATCAGCTAGTCCAGATCGACCCGCCCCAGCAGGAGAGGTGGTCTGTGGCCAAAAACACACAGACCTCCCCCACGGATGCCTTCGGGACCATCGACTTCCAGGGTGGAGGCCTCATCAACAAGGCAATGTACATCAGAGTGTCCCATGACTCTAAGCCAGACAATCTCCTCCAACTGATGGTGAAAGACTGGCAGCTGGAACTCCCCAACCTGCTCATCTCCATTCACGGAGGGCTGCAGAACTTTGACCTGCAGCCCAAACTCAAACAGGTGTTAGGGAAGGGACTCATCAAGGCTGCAGTCACCACCGGAGCATGGATCTTCACTGGTGGAGTCAGCACTGGTGTGATTCGTCACGTGGGGGATGCCCTGAAGGACCACTCCTCTAAGTCCAGAGGGAAGGTATGTGCCATCGGTATCGCTCCCTGGGGCATCATAGAGAACAAGGAGGACCTCATCGGTAGAGATGTAACACGGCCATACCAGACCATGTCCAACCCGCTCTCCAAGCTGTCTGTCCTGAACAACAGCCACTCCCACTTCATCCTGGCCGACAACGGCACTACAGGGAAGTACGGAGCGGAGGTGAAGCTACGCCGCCAGCTGGAAAAACACATCTCACTGCAGAAGATCAACACACGCCTTGGCCAGGGGGTCCCGTTGGTGTGTCTGATAGTAGAGGGAGGTCCTAATGTCATCTCCATCACCCTGGAGAGTCTGAAGGAGGAACCTCCCGTCCCCGTGGTGGTCTGTGATGGCAGCGGGAGGGCATCGGACATCATGTCCTTCGCTCACAAATACTGcgaggagggaggTCTGATAACTGACGACGTGAGGGACCAGCTACTGGTGACCATACAGAAGACCTTCAACTATAGTAAGAGCCAATCACAGCAGATCCTGCTCATGGTCATGGAGTGCATGAAGAAGAAGGAGCTGATAACAGTGTTTCGAATGGGTTCTGAAGGACAGCAAGATATTGAAATGGCCATTCTGACTGCTTTATTAAAAGGAACCAACGCCTCTGCGCCGGACCAGCTGAGTCTAGCTCTGGCCTGGAACAGAGTGGACATAGCACGCAACCAGATCTTTGTCTACGGTCACCATCTACCAcctgccAGTGCCCTAGCTAACAGCAGTGGTACCGTAGCCACTACCACAGAGAGGCCGAAGAGTCCAGCCGCTGCCCCCAGGAACAAGGCCAAGGCCCGGGGGAAaaaggggaagggagggaaggccAAGCCTGAACCACCAGAGGAGACTGACCCTAGGAAGATAGAACTAATGCGATGGGTGAACTCTCTGGAGCAGGCCATGATGGATGCCTTGGTGCTGGACAGGGTGGACTTTGTCAAGCTGCTGATAGAGAACGGCGTCAACATCCACCACTTCCTCACCATTCCTCGCCTGGAGGAGCTGTACaacacgagactgggtCCTGCTAACACGTTGCATGTTGTGGTGAGAGATGTCAAGAAGGGCAACCTCCCGCCAGACTACCAGATCACTCTGATTGACATTGGTCTGGTGATGGAGTACCTGATGGGTGGGGCTTACCGCTGTAACTACACCAGGAAGAACTTCAGGGCGCTTTACAACAACCTCTACGGGCTGAAGAGGCCAAAAGCCTTGAAGATGCTGGGGCTGGAGGATGACGAACCGAGGggaaagaagaagaaagggaagaagaagaaagaggaggaggtagagatagaTGTGGACGACCCTGAGGTCTGTCGCTTCACCTACCCCTTCCACGAGCTGATGGTGTGGGCCGTTCTCATGAAGCGCCAGAAGATGGCGCTGTTTCTGTGGCAACGTGGGGAGGAGGCCATGGCCAAGGCTCTGGTGGCCTGTAAGCTATACACAGCCATGGCTAAAGAGTCATCTGAACTGGTGGACGATATCGCCCAGGACCTGGACAACAACTCCAAGGAGTTTGGCCAGCTTGCCTACGAGCTCCTGGACCAGTCCTATAAGCACGATGAACAGGTGGCCATGAAGCTGCTGACGTATGAGCTGACCAACTGGAGCAACTCTACCTGTCTGAAGCTGGCCGTGGCCGCCAAGCACAGAGACTTCATCGCCCACACCTGCAGTCAGATGCTGCTGACCGACATGTGGATGGGAAATCTGAGAATGGGGAAGAACCCTGGGCTTAAGGTGATTCTGGGCATCATATTCCCTCCATCAATTCTGCTGCTGGTGGACTTCAAAGGAGAAGACCAGTCCTACACAGCTGACTCTGAAGAAGGGAAAGACAAGGACGATGACGCTGGCAAGGATGACGTTGTGTCAAGGAAGGGGGATGAAGAGGAGGGCAGCAGTAATGTCAGGAGGAAGCCCATTGGACGGAGGATCTATGAGTTCTATGATGCCCCGTTCACCAAGTTCTGGTTCAACACCATCTCCTACCTGGGCTACCTGATGCTGTATAACTACATAATCCTGGTGAAGATGGAGCGATGGCCGTCCATCCAGGAGTGGACCGTCATTGCCTACATCCTAACGCTCGGCTTCGAGAAAGTCAGACAGATCCTAATGTCAGAGCCTGGGAAGCTGAAGCAGAAGATCAACGTATGGCTGCAAGAGGTCTGGAACATCACTGACCTGGCAGCCATCTCCACCTTCCTGGTTGGCCTTCTGCTGAGGCTGCAGAACGAACCCCTCCTGGGCATCGGACGTGTCATCTACTGCATAGACATCATCTTCTGGTACATCAGGGTGCTCGACATCTTCGGGGTCAACAAGTACCTGGGACCCTATGTCATGATGATTGGGAAAATGATGATCGACATGCTGTACTTCGTGATAATCATGTTGGTGGTGTTGATGAGTTTCGGGGTGTCGCGGCAGGCCATCTTGCACCCTGATGAGGAGCCAACATGGCGTTTGGCCAGGAACATCTTCTACATGCCCTACTGGATGATCTATGGAGAGGTGTTTGCTGACTCGATCGACCTCTATGCAATGGAAATCAACCCGCCGTGTGGTGAGAACCTGTACGATGAGGATGGTAAGAAGCTGCCTCCGTGTATCCCTGGAGCCTGGCTGACCCCGGCCATCATGGCCTGTTATTTACTGGTGGCCAACATCCTGCTGGTCAACCTGTTGATTGCTGTCTTCAACAACACTTTTATGGAGGTGAAGGCCATCTCCAACCAGATCTGGAAGTTCCAGAGATATCAGCTGATTATGATCTTCCATGACCGTCCAATCCTCCCTCCGCCCCTCATCGTGTTCAGTCACCTCTACCTCCTGTTCAGAAGCTTTCGCTGCACCAAGAAGAATGATGGAGATCTGAATGAGAAGGACAGAGGACTCAAGCTACGGCTAAACCCTGAGGAGCTGAAGGCTCTATTTGAGTTTGAGGAGCAGTGTGTGGAGGAATACTTCAGAGAGAAGGAAGACGAGCACCATTCATCCAGTGACCAGAGGATCAAGGTCACATCAGAACGGGTGGAGAACATGTCCATGCGTCTGGAGGAGGTGAATGAGCGGGAGAACACCATGAAGGCGTCCCTGCAGACGGTGGACCTTCGCCTGGCTCAGCTGGAAGACATCCACAGCCGCATGATGAACGCCCTAGAGAAGCTGGCTGGGGTCGACCATTCAGAGCTTAAACGCTCCCACTCCACACACTCCTCCTACTGCGACCCGTCCTCCCTGCTCCGAGCCAGCTCCATCAACAGCGCTGACGGGTACAGCATGTACCGCTTCCAGATGGACGTGGAGGAGGCTGAGAGGAAAGCCCAGCTTGGCACTGAGAGGCAGGGCAGTGTACGGTCTCGCCTAGGGTCTGAGAGGCAGGGCAGTGTGCTGTCTCGTCTAGGGTCTGAAAGACAGGGCAGCGTACTGTCTCGTCTAGGGTCTGACAGACAGGGCAGTGTCAGCAGAACATCCAACCTGTCTGTAGGTCCGGAGAGACAGGGCAGTCTACAGAAATTGTCTAGCGCATCTACCCTGACTGTAGGCCGGGAGCGACATGGCAGCCTACAAACCAGAGTTTCCAAGGACTACGGCCAGCCATTAGACATGGACAGAGCAGACAGGACACGGCCCAGCTCCTATGTGGACATCCTGATCTCCCCATGTGAACAAAGGGCTgaaggggagacagatggaggagaaAACAAGTCTGACATACCTAAAGACAAAGTACCAGACCCCACAGATCCACTGGATGCTGCATTAGCTAAAGCAGGTCTACCAAGAGAGAAGACCAAGCTGGAGAAGTCTAGATCTGTTAAATGCTATCCCAGCAACCCTGTGGATCACTGCATTACCACTAGAAGCAGGGCTAAGAGCACTATCCTCTACGACCAAACTGCTGCCAATTGCGAGGCCCTCTGGGTTGCAGACTACAATACTAAACAGGAATCCCCAGACAGTAGAGATCCTCTGGATAGTGCATTAGCTAAAGAAGGTCTGCCAAGAGAGAAGTCCAAGCTGGTGGCAACCATGTCCTCCCCATTGGCGAAGTTTATCCATCCTATCCCATACTACCACACCACACCTCCGTTTACCCCTCGATCCACTAGGACCAGGGCTAAAAGCAACATCTCCCCAACCACCGCAGGGGATGAGAGTGAGGCCCTCTGGGCTGCAGACTACAGATCTGTGATAGACCAGGTATCCGATGCTCCAGGCCAGTTGCCAGCCTGCTGGGAGTACAAGGTCCACCACATCCACATCGGACAACAGCCCAAGGTCTCTGTGGTCAGGCCTCATGGCCAGCTACCTGACACACAGAGATTCTCTGAACCTGAGCCTGAAAAACTGGAGTCTAACATGGTTCCTCTGATTCCACCAGCTGTAGAGACTGAACTACTTAAACAGCATTCTGACATGGTTCAACAAGATGCTTTGCTGGTTCCACCAGAGGCTTTGCTGGTTCCTCCAGACATTAAGTTGTCACCTCCTCCTCCGACTGAGCTGGATCCTTCAGAGACTGAGTTGGTTCCACGAGTTCTTCCACTGGGTCCTCCAACTATAGCAACATACCTGGTTCTTCCAACCATAAAAACACACCTGGTACCTCAAACCATAGAGAGGGAACTAGTTATTCCAGCTATAGAGACTGAACTAGTTGTTCCAGCTATAGATACTGCACTAGTTATTCCAGCTACAGAGACTGAACAAGATGGTCCAACCACATACACTGGATTCATTATTCCAACCATAGAGAGTGAGCTACTTATTCCAACCATAGAGAGTGAGCTACTTATTCCATCTATAGAGAGTGAATTACTTATTCCGTCTATGGAGAGTGAACTACTTATTCCATCTATAGAGACTGAACTATGTATTCCAATCATAGAGACTGAACTATGTATTCCAACCATAGAGACTGAACAACTTTTTCCGACCATAGAGACTGAACTACAAATTCCAAACAAAGAGACTGAACTTCTTATTCGACCCCACCCAGGTATGGCAGGCTACTGGCCCAGTCAAGGCTACCTGCTGATGGCTGAGAAGAAGAGGATGTTCTCCCTAAGGTCTAAGGGCTGGAACGCCAGCAACCGGAGGAAGAGCCTGGGATAGAGCATAGAGAAACCAAGAGCCACTAGCAGTGACAAAGAccactgtcaaacactccagGATCATCCACCATTGGACCACTGTCAAAAACTCCAGAACCATCCACCACTGGACCACTGTCAAATACTCCAGAACCATCTACCACTGGACCACTGTCAAATACTCCAGAACCATCCACCACTGGACCACTGTCAAATACTCCAGAACCATCCACCACTGGACCACTGTCAAATACTCCAGAACCATCTACCACTGGACCACTGTCAAATACTCCAGAACCATTCACCACTGGACCACTGTCAAATACTCCAGAATCATCCAGCACTGGACCACTGTCAAATACTCCAGAACCATCCACCACTGGACCACTGTCAAATACTCCAGAATCATCCACCACTGGACCACTGTCAAATACTCCAGAATCATCCAGCACTGGACCACTGTCAAATACTCCAGAACCATTCACCACTGGACCACTGTCAAATACTCCAGAACCATCCACCACTGGACCACTGTCAAATACTCCAGAATCATCCACCACTGGACCACTGTCAAATACTCCAGAATCATCCACAACTGGACCACTGTCTAATACTCCAGAATCATCCAGCACTCCGGCTGAACACTTGTTGTCCCGGTCAAATGTAAACTGTCCTACAACAATAATACTTTTTTCACTAATCAACCTCCCAGAATAAATgattttccctatatagtattgtggggattaaaaataaaaactacaTCATTGTAATACCTACAAAAttagaataaaataaataatctaTTGCCATTTAGTCCACTTCCTTTGTGAAGCTGCATTCACATCACCACACTCTGAACTGCTTGCCTTATGACTGGTACTAGCTATCATCCTCTACCTGAGCATTAAAACACAACCATTTAACTGACTGTTACCTGGAAATATTGTTACCAAACCAGTTAGTCAGACTACTGAAAACCCTTCACTATGTCTGGGCTCCTAGACCTACCAACCAgctccagacaggacaggtgttGTCTGTGTACCACGAGGCAGGTAGCTCACCTTCTCCAggttctgacctctgacctttgtcATCTGGGTCGAGCAATTCCAGTGTTTGGTCATTCAATTGTTTGTATGTCTCGTGCTACCAAGTATAGGCCTATATGTTACAGGCACCAGGAATGTGGCTTGAAATTAATTGACAGGAAAGCATGATCATGTTTGGATTGTTTTACTGCATCAGCTTCAGGAGTTGTCAATACAGTGTAATTTCATTGTATTCAATACTTCATAAAACAATTAACAAAGCAGCTAGCTGACTACATAGACAGACTGAAACACAGATAGGTTAGCTATCCATAAACAACTGGTATCTAGCAAAACCAATAGCTAAATGTAGATACAAACTATGCAAAATAGCACTTAGATAGTTTGACAAAACATTATACGGGCTATAAAACGAAAGACCAGCTGTTACATATAAGCTTCTTCTGCTATGGTATTATGGCGGTCTGGAAACAAACGCTGCCACCAACTGGACGGGATGAATAAATTCACAAATGGAAAGTCAATTCCATTACAGGAAGGGGCAAAAAATTAcatgaattaaaaaaatatatacagtatatatactgtatataatacaaATTATCACATAAAAATCTTCCCACTCCTTCAGTCATCAGAtatttgtgactcgtttcaggaaactaggcaagtcacgacttcacaggagagccatttttactttttattttttatatttttt
>TU241892
ggtaggggtagccagataaggcggggctttacctagcaaatatttatagatgacctggcgccaatgggtttggcgatgaatatgaagcatAGGCCAGCCCTAGTTCCTCAAACAACAGAGACTGAAACATTATTCCAACCATAGAGACCGAACTAGGTTAGCCGAACTTGCTATAGTGAATGATCTCCTTACTCCAACAATAGCAATTTAAATAGTTATTCTATCTATATAGACTGAAGTAGTTGTTTCAACCATATAGACCTAAATAGTTATTCCAAACATAGAATAACTATTTCCTtcacccccacagcaacttgcccaagccttccccatttctccttcacccaaatccagacagctgatgttctgaaagtgtTGCAAAATCTTGTTATTTCAACCAGTGAGACTGAATTTGTGATTCCTATTATAGAGACTGAACTAGTTATTCTAACCAAAGAGGTTGAACTAGTTATTCCAAAAATAGAGACCAAAGAGGTTGAACTATTTATTCCAACCATTGAGACTGAATTAGTAATTTCAACAATAGAGACAAACTAGTTATTCCAGCTATAGAGATTGAACTAGTTATTCCATCCATACAGACTGAGGAGGACCCCACCCAGGTATGGCAGGCTACTGGCCCAGTCAAGGCTACCTGCTGATGGCTGAGAAGAAGAGGATGTTCTCCCTAAGGTCTAAGGGCTGGAACGCCAGCAACCGGAAGGGAAGAGCCTGGGATAGAGCATAGAGAAACCAAGAGCCACTAGCAGTGACAAAGAccactgtcaaacactccagGATCATCCACCATTGGACCACTGTCAAAAACTCCAGAACCATCCACCACTGGACCACTGTCAAATACTCCAGAACCATCTACCACTGGACCACTGTCAAATACTCCAGAACCATCCACCACTGGACCACTGTCAAATACTCCAGAACCATCCACCACTGGACCACTGTCAAATACTCCAGAACCATCTACCACTGGACCACTGTCAAATACTCCAGAACCATTCACCACTGGACCACTGTCAAATACTCCAGAATCATCCAGCACTGGACCACTGTCAAATACTCCAGAACCATCCACCACTGGACCACTGTCAAATACTCCAGAATCATCCACCACTGGACCACTGTCAAATACTCCAGAATCATCCAGCACTGGACCACTGTCAAATACTCCAGAACCATTCACCACTGGACCACTGTCAAATACTCCAGAACCATCCACCACTGGACCACTGTCAAATACTCCAGAATCATCCACCACTGGACCACTGTCAAATACTCCAGAATCATCCACAACTGGACCACTGTCTAATACTCCAGAATCATCCAGCACTCCGGCTGAACACTTGTTGTCCCGGTCAAATGTAAACTGTCCTACAACAATAATACTTTTTTCACTAATCAACCTCCCA

Function

NR:

description
PREDICTED: uncharacterized protein C1orf43-like isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934561.1 False 7544 mRNA 0.50 29 102038038 102167821
TU241892 True 1430 lncRNA 0.44 1 102165327 102166756

Neighbor

gene id symbol gene type direction distance location
LOC110516669 LOC106590745 coding upstream 342554 101634630 ~ 101695484 (+)
best1 LOC102229874 coding upstream 666864 101345285 ~ 101371174 (+)
LOC110501031 LOC106592222 coding upstream 1073252 100929368 ~ 100964786 (+)
LOC118936893 NA coding upstream 1178776 100848174 ~ 100860603 (+)
LOC110502612 LOC106584763 coding upstream 1189697 100785531 ~ 100848341 (+)
LOC110501421 LOC106561865 coding downstream 16538 102184359 ~ 102238260 (+)
LOC110501429 LOC106561864 coding downstream 94296 102262117 ~ 102278883 (+)
LOC110501451 LOC106561861 coding downstream 139676 102307497 ~ 102314434 (+)
LOC118936918 NA coding downstream 432797 102600618 ~ 102608333 (+)
slc24a1 LOC106561848 coding downstream 515001 102682822 ~ 102721240 (+)
G212958 NA non-coding upstream 59300 101978477 ~ 101978738 (+)
G212898 NA non-coding upstream 179236 101858563 ~ 101858802 (+)
G212885 NA non-coding upstream 188985 101848624 ~ 101849053 (+)
G212872 NA non-coding upstream 200390 101837429 ~ 101837648 (+)
G212870 NA non-coding upstream 202247 101835581 ~ 101835791 (+)
G213050 NA non-coding downstream 8390 102176211 ~ 102176457 (+)
G213064 NA non-coding downstream 26168 102193989 ~ 102199459 (+)
G213065 NA non-coding downstream 31773 102199594 ~ 102199929 (+)
G213066 NA non-coding downstream 35850 102203671 ~ 102211768 (+)
G213102 NA non-coding downstream 119692 102287513 ~ 102287787 (+)
G212863 NA other upstream 292064 101742899 ~ 101745974 (+)
G212690 NA other upstream 481668 101554385 ~ 101561158 (+)
G212674 NA other upstream 521934 101509760 ~ 101516104 (+)
G212656 NA other upstream 551242 101482181 ~ 101486796 (+)
G211809 LOC107574289 other upstream 1569881 100467678 ~ 100468157 (+)
G213051 NA other downstream 9588 102177409 ~ 102177918 (+)
G213055 NA other downstream 70482 102238303 ~ 102239540 (+)
G213185 NA other downstream 346386 102514207 ~ 102516302 (+)
G213221 NA other downstream 427710 102595531 ~ 102599866 (+)
G213645 NA other downstream 511554 102679375 ~ 102680096 (+)
G213031 NA non-coding upstream 47087 102117356 ~ 102118240 (+)
G212999 NA non-coding upstream 124557 102040231 ~ 102040770 (+)

Expression


Co-expression Network