LOC110501429 (LOC106561864)


Basic Information

Item Value
gene id LOC110501429
gene name LOC106561864
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 102262117 ~ 102278883 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021578996.2
TAACTGCCAATCCTCCACTTCCCCTGTAGTTTACTGGAGACTACAATCGTCATTCACTCTGCTGAAGactagagagaacacacagacaacatcatGAAACAAATGGTCATATTTGGGGTTTTTGCTTTTGCTACATTCTACATGGTTCACACTGAAGTACCAGAGTACTGTTCCCTACCACAGGATGAGGGTACAGCTCCAACCTCAGGAGCAGATGACTTCCAGATCCTGCTGTATTATGACGCAGCAAAAGACCTGTGCTACCCCTTCAAGTACCTGGGGGAGGGCGGCAACGCTAACCGCTTCACCCTGGAGAAGCTCTGTATGAGGAACTGTTCTGCCAAGGCAGAGGAGATCTATCCCGTGGACGAGTCAAAAGCCTGCCACTTCAAGAAGGCTCTGGGTGAATGCTTTGGCACCTACCTGCGTTATTTCTACGACCCCATCCATGAGAAGTGTAAGAAGTTTCACTGGACTGGCTGTGTGGGGAACGGGAACAGGTTCATCGACCATCAGGCCTGTAATGCCACCTGTGCTGGGATTCATGATGAGGgtactgaagaggaggaggatgagccCGATACTCCTGTTGCCCTGATTCTAGGAGTGGTGTTTGGGATCACTGGAGCAATACTCATCATAGTCATTGTTGTCCTGGCCATGCAGAGCAAGAAGAATCACAAAAGTGATACAAAGAAAGTGAAAGATGTCAAGCTGGAGACACAACTGCAAGAAGAACCAATTGAGATGGCgtagagaagagaagacaacCATGAAAGGAAATTAGAATGACTAGAACGCATGATTTCATTCATGTCAGCGTCCATGATGAGTTGACGGGAAGCCATATTGAGTGTACACATGCCAGTCATTCTAATTGTAGGGGAAAAACCAGCTCTGGCCCTCATCTGAATGGCCCCTCTCAGGGTGATATCATAGAGTAACATAGGCCTACAGTTGCAACTAACAAACTTCAAATTCCATATAATGTTTACCTCATTTGTTGTTATCAGACTATTCAAAAATCATTTGTTTCTGTGTTGACAATATCGTATCTGACTTCCCCATCACAAATGTACGCCAGGCTATTTTCCTCATGGTTATGTTTGACATCTCAGTTATtttataatgtat

Function

NR:

description
kunitz-type U19-barytoxin-Tl1a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021578996.2 True 1134 mRNA 0.45 6 102262117 102278883

Neighbor

gene id symbol gene type direction distance location
LOC110501421 LOC106561865 coding upstream 23857 102184359 ~ 102238260 (+)
LOC110502669 LOC107698134 coding upstream 94296 102038038 ~ 102167821 (+)
LOC110516669 LOC106590745 coding upstream 566633 101634630 ~ 101695484 (+)
best1 LOC102229874 coding upstream 890943 101345285 ~ 101371174 (+)
LOC110501031 LOC106592222 coding upstream 1297331 100929368 ~ 100964786 (+)
LOC110501451 LOC106561861 coding downstream 28614 102307497 ~ 102314434 (+)
LOC118936918 NA coding downstream 321735 102600618 ~ 102608333 (+)
slc24a1 LOC106561848 coding downstream 403939 102682822 ~ 102721240 (+)
LOC110501485 LOC106591986 coding downstream 456654 102735537 ~ 102756512 (+)
c2h15orf61 cssa10h15orf61 coding downstream 577007 102855890 ~ 102857341 (+)
G213066 NA non-coding upstream 50349 102203671 ~ 102211768 (+)
G213065 NA non-coding upstream 62188 102199594 ~ 102199929 (+)
G213064 NA non-coding upstream 62658 102193989 ~ 102199459 (+)
G213050 NA non-coding upstream 85660 102176211 ~ 102176457 (+)
G213102 NA non-coding downstream 8630 102287513 ~ 102287787 (+)
G213103 commd4 non-coding downstream 9829 102288712 ~ 102292227 (+)
G213104 NA non-coding downstream 13987 102292870 ~ 102293088 (+)
G213113 NA non-coding downstream 29410 102308293 ~ 102387508 (+)
G213129 NA non-coding downstream 71445 102350328 ~ 102352286 (+)
G213055 NA other upstream 22577 102238303 ~ 102239540 (+)
G213051 NA other upstream 84199 102177409 ~ 102177918 (+)
G212863 NA other upstream 516143 101742899 ~ 101745974 (+)
G212690 NA other upstream 705747 101554385 ~ 101561158 (+)
G212674 NA other upstream 746013 101509760 ~ 101516104 (+)
G213185 NA other downstream 235324 102514207 ~ 102516302 (+)
G213221 NA other downstream 316648 102595531 ~ 102599866 (+)
G213645 NA other downstream 400492 102679375 ~ 102680096 (+)
G213775 NA other downstream 785434 103064317 ~ 103065327 (+)
pias1b LOC106584817 other downstream 842706 103087359 ~ 103125059 (+)

Expression


Co-expression Network