G104116


Basic Information

Item Value
gene id G104116
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 756786 ~ 757771 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU116897
CGTCCCCGGGGGAGAGGCTGATCTCGTCAGGGGAGGTGATGGAGGAGCGGGTGGTCCTGGGGGTACGAGGGGACGGCAGGGTGTCCCAGGCGTTGTGCCCACTAGGAGGAGCACTGGGCATGTGGACCCCAGACCGCTGGCAGCATTCCTCAGCGTTAGACATCCAGGCCTCCAGCAGgttctccctgtcccagtctacagCAGGAGAGATAGAAAACACTAGTTAGATCATATCCTTTACAGTCTACAGCAGGTTCTCTAGGTCCCAGTCTACAGCAGGAGAGATAGAAAACACTAGTTAGATCATATCCTTTACAGTCTACAGGAGGTTCTCTAGGTCCCAGTCTACAGCAGGTTCTCTAGGTCCCAGTCTACAGCAGGTTCTCTAGGTCCCAGTCTACAGCAGGTTCTCTAGGTCCCAGTCTAGAGCAGgttctctctgtcccagtctacAGCAGGTTCTCTAGGTCCTAGGTCCTCTAGGTCCCAGGAGGATCCTAGTACCTACTGAGTCAACGTGTGGGGGTaaaggttagtcaaggtcatttgcaAAGTGACCAGGcattgataataaacagcgagtagcagcagggtaaaaaggaaggaaggaagga
>TU116899
CGTCCCCGGGGGAGAGGCTGATCTCGTCAGGGGAGGTGATGGAGGAGCGGGTGGTCCTGGGGGTACGAGGGGACGGCAGGGTGTCCCAGGCGTTGTGCCCACTAGGAGGAGCACTGGGCATGTGGACCCCAGACCGCTGGCAGCATTCCTCAGCGTTAGACATCCAGGCCTCCAGCAGgttctccctgtcccagtctacagCAGGAGAGATAGAAAACACTAGTTAGATCATATCCTTTACAGTCTACAGCAGGTTCTCTAGGTCCCAGTCTACAGCAGGTTCTCTAGGTCCCAGTCTACAGCAGGTTCTCTAGGTCCCAGTCTACAGCAGGTTCTCTAGGTCCCAGTCTACAGCAGGAGAGATAGAAAACACTAGTTAGATCATATCCTTTACAATCTTAAGGCTGTACTCTCCACTACATCCTACAGCAGgttccctctgtcccagtctacAGCAGGTTCTCTAGGTCCCAGTCTACAGCAGGTTCTCTAGGTCCCAGTCTAGAGCAGgttctctctgtcccagtctacAGCAGGTTCTCTAGGTCCTAGGTCCTCTAGGTCCCAGGAGGATCCTAGTACCTACTGAGTCAACGTGTGGGGGTaaaggttagtcaaggtcatttgcaAAGTGACCAGGcattgataataaacagcgagtagcagcagggtaaaaaggaaggaaggaagga
>TU116900
CGTCCCCGGGGGAGAGGCTGATCTCGTCAGGGGAGGTGATGGAGGAGCGGGTGGTCCTGGGGGTACGAGGGGACGGCAGGGTGTCCCAGGCGTTGTGCCCACTAGGAGGAGCACTGGGCATGTGGACCCCAGACCGCTGGCAGCATTCCTCAGCGTTAGACATCCAGGCCTCCAGCAGgttctccctgtcccagtctacagCAGGAGAGATAGAAAACACTAGTTAGATCATATCCTTTACAGTCTACAGCAGGTTCTCTAGGTCCCAGTCTACAGCAGGTTCTCTAGGTCCCAGTCTACAGCAGGTTCTCTAGGTCCCAGTCTACAGCAGGAGAGATAGAAAACACTAGTTAGATCATATCCTTTACAATCTTAAGGCTGTACTCTCCACTACATCCTACAGCAGgttccctctgtcccagtctacAGCAGGTTCTCTAGGTCCCAGTCTACAGCAGGTTCTCTAGGTCCCAGTCTAGAGCAGgttctctctgtcccagtctacAGCAGGTTCTCTAGGTCCTAGGTCCTCTAGGTCCCAGGAGGATCCTAGTACCTACTGAGTCAACGTGTGGGGGTaaaggttagtcaaggtcatttgcaAAGTGACCAGGcattgataataaacagcgagtagcagcagggtaaaaaggaaggaaggaagga
>TU116903
CGTCCCCGGGGGAGAGGCTGATCTCGTCAGGGGAGGTGATGGAGGAGCGGGTGGTCCTGGGGGTACGAGGGGACGGCAGGGTGTCCCAGGCGTTGTGCCCACTAGGAGGAGCACTGGGCATGTGGACCCCAGACCGCTGGCAGCATTCCTCAGCGTTAGACATCCAGGCCTCCAGCAGgttctccctgtcccagtctacagCAGGAGAGATAGAAAACACTAGTTAGATCATATCCTTTACAGTCTACAGCAGGTTCTCTAGGTCCCAGTCTACAGCAGgttctctctgtcccagtctacAGCAGGTTCTCTAGGTCCTAGGTCCTCTAGGTCCCAGGAGGATCCTAGTACCTACTGAGTCAACGTGTGGGGGTaaaggttagtcaaggtcatttgcaAAGTGACCAGGcattgataataaacagcgagtagcagcagggtaaaaaggaaggaaggaaggaaggaaggaagaaaggaaggaaggaaggaagtaggtaagtaagtaagtaagtaagtaagtaagtaagtaggtaggtaggtaggcaggtgtgtgtgtgtggtccataCCATGTGCTCTAAGCAGAGCCTCAGCAGTAAAGAGAGGGGTCTGCAGCATGTCTGCCGTCTCCACTATCAGCATGTCCTTCAGACGACGCAGCTCCTGAGGCCTCAGACCCTCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU116897 False 614 lncRNA 0.49 3 756786 757552
TU116899 False 692 lncRNA 0.53 2 756786 757552
TU116900 False 666 lncRNA 0.53 2 756786 757552
TU116903 True 680 lncRNA 0.54 2 756786 757771

Neighbor

gene id symbol gene type direction distance location
LOC118937316 LOC106573240 coding upstream 30811 724791 ~ 731551 (+)
zgc:110410 LOC106594189 coding upstream 34393 714730 ~ 722393 (+)
LOC110512917 csmd3 coding upstream 84592 149182 ~ 672194 (+)
LOC118936272 LOC106596174 coding upstream 738690 13864 ~ 18096 (+)
cmc1 cc068 coding downstream 102688 860459 ~ 872515 (+)
LOC110506977 LOC106595099 coding downstream 147805 905576 ~ 908576 (+)
LOC118936923 NA coding downstream 210845 968616 ~ 969528 (+)
rbms3 rbms3 coding downstream 265690 1023461 ~ 1231535 (+)
LOC110515032 LOC106606177 coding downstream 464359 1222130 ~ 1224904 (+)
G104114 NA non-coding upstream 2458 753699 ~ 754328 (+)
G104111 NA non-coding upstream 8510 746396 ~ 748276 (+)
G104106 NA non-coding upstream 15233 740962 ~ 741553 (+)
G104102 NA non-coding upstream 54435 699871 ~ 702351 (+)
G104128 NA non-coding downstream 20418 778189 ~ 779730 (+)
G104138 NA non-coding downstream 120288 878059 ~ 878664 (+)
G104179 NA non-coding downstream 129191 886962 ~ 897406 (+)
G104181 NA non-coding downstream 151287 909058 ~ 911619 (+)
G104183 NA non-coding downstream 154022 911793 ~ 912016 (+)
G104092 NA other upstream 55515 690046 ~ 701271 (+)
G103851 NA other upstream 575764 174996 ~ 181022 (+)
G104761 NA other downstream 395290 1153061 ~ 1153749 (+)
tgfbr2b LOC106606173 other downstream 551507 1309202 ~ 1390936 (+)
G105036 NA other downstream 941302 1699073 ~ 1700431 (+)
G105042 NA other downstream 951198 1708969 ~ 1710557 (+)

Expression


Co-expression Network