G104878


Basic Information

Item Value
gene id G104878
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1233007 ~ 1234595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU118029
CATTATGTAGAGTCAGGTCAGGTGGGCAGATTTACAAGGTGTGAGCTCAGCACAGATAGCCAATCAGACTCCTTGGTGGTACTGTAATCAGCCAATCAGACTCCTTGGTGGTACTGCAATCAGCCAATCAGCCTCCTTGGTGGTGCTGTAATCAGaattgtactgtaatgtatacaGTACAGTTATCACGAGGCTAGATCTTGGTTATACCATTGTTGAAACTATAAGCCTCGAGAAGCCTCGAGATGGCTCTAAAACAACTTcaaacccccccctccccagtcagctgactggctgactgactggctgattggctgactggctcCCCAATACTGAACACTTGTGTAGCAGCTAAAACATTAAAGTCAATTCTCAAATAATTGCAgcacattttaaaaaaattatgTTTTACTTTTCTTTTTTCCTCTCTAAGACAAGATAGCTGAAGATGATCAGATAAGCAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAACATGATCAGATAAGTAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGTAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGCTACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGCAACCAGAAACTAGCATGATGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGCAACCAGAAACTAGCATGGTGTCTTTGTCTAAGACAAGATAGCTGAAGATGATCAGATAAGCAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGTAACCAGAAACTAGCATGATGTCTTTGTCTCAGACAAGATAGCTAAAGATGGTCAGATAAGCAACCAGAAACTAGCATGATGTCTTTGTCTCAGACAAGATAGCTAAAGATGGTCAGATAAGCAACCAGAAACTAGCATGATGTCTTTGTCTCAGACAAGATAGCTAAAGATGACTAGATAAGCAACCAGAAACTAGCATGATGTCTTTGTCTCAGACAAGATAGCTAAAGACGACTAGATAAGCAACCAGAAACTAGCATGATGTCTTTGTCTCAGACAAGATAGCTAAAGATGACTAGATAAGCAACCAGAAACTAGCATGATGTCTTTGTCTCTGACAAGATAGCTAAAGATGACTAGATAAGCTACCAGAAACTAGCATGATGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGTAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGCAACCAGAAACTAGCATGATGTCTTTGTCT
>TU118030
GATAGCTGAAGATGATCAGATAAGCAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAACATGATCAGATAAGCAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATGGCTGAAGATGATCAGATAAGCAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGTAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGTAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGCTACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGCAACCAGAAACTAGCATGGTGTCTTTGTCTAAGACAAGATAGCTGAAGATGATCAGATAAGCAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGTAACCAGAAACTAGCATGATGTCTTTGTCTCAGACAAGATAGCTAAAGATGGTCAGATAAGCAACCAGAAACTAGCATGATGTCTTTGTCTCAGACAAGATAGCTAAAGATGGTCAGATAAGCAACCAGAAACTAGCATGATGTCTTTGTCTCAGACAAGATAGCTAAAGATGACTAGAT
>TU118028
CATTATGTAGAGTCAGGTCAGGTGGGCAGATTTACAAGGTGTGAGCTCAGCACAGATAGCCAATCAGACTCCTTGGTGGTACTGTAATCAGCCAATCAGACTCCTTGGTGGTACTGCAATCAGCCAATCAGCCTCCTTGGTGGTGCTGTAATCAGaattgtactgtaatgtatacaGTACAGTTATCACGAGGCTAGATCTTGGTTATACCATTGTTGAAACTATAAGCCTCGAGAAGCCTCGAGATGGCTCTAAAACAACTTcaaacccccccctccccagtcagctgactggctgactgactggctgattggctgactggctcCCCAATACTGAACACTTGTGTAGCAGCTAAAACATTAAAGTCAATTCTCAAATAATTGCAgcacattttaaaaaaattatgTTTTACTTTTCTTTTTTCCTCTCTAAGACAAGATAGCTGAAGATGATCAGATAAGCAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAACATGATCAGATAAGCAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATGGCTGAAGATGATCAGATAAGCAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGTAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGTAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGCTACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGCAACCAGAAACTAGCATGGTGTCTTTGTCTAAGACAAGATAGCTGAAGATGATCAGATAAGCAACCAGAAACTAGCATGGTGTCTTTGTCTCAGACAAGATAGCTGAAGATGATCAGATAAGTAACCAGAAACTAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118029 False 1406 lncRNA 0.48 3 1233007 1234595
TU118030 False 692 lncRNA 0.40 2 1233345 1234158
TU118028 True 965 lncRNA 0.56 2 1233509 1234595

Neighbor

gene id symbol gene type direction distance location
azi2 azi2 coding downstream 327589 879818 ~ 905418 (-)
eomesb eomesb coding downstream 419817 806150 ~ 813190 (-)
LOC110516483 LOC106573240 coding downstream 442136 727654 ~ 790871 (-)
LOC118937315 NA coding downstream 556495 672497 ~ 676512 (-)
LOC118937314 NA coding downstream 724938 423319 ~ 508560 (-)
LOC118937319 NA coding upstream 81069 1314565 ~ 1316245 (-)
LOC110515934 gadl1 coding upstream 192656 1427251 ~ 1457133 (-)
LOC110515405 LOC106590999 coding upstream 338807 1573402 ~ 1683489 (-)
kiaa1143 k1143 coding upstream 468356 1702951 ~ 1704863 (-)
zdhhc3a zdhhc3 coding upstream 474921 1709516 ~ 1732333 (-)
G104877 NA non-coding downstream 2248 1229754 ~ 1230759 (-)
G104872 NA non-coding downstream 15367 1216951 ~ 1217640 (-)
G104871 NA non-coding downstream 20654 1211036 ~ 1212353 (-)
G104870 NA non-coding downstream 22602 1208686 ~ 1210405 (-)
G104863 NA non-coding downstream 58229 1173334 ~ 1174778 (-)
G104865 NA non-coding upstream 14868 1249463 ~ 1249910 (-)
G104887 NA non-coding upstream 18174 1252769 ~ 1254053 (-)
G104890 NA non-coding upstream 23212 1257807 ~ 1258074 (-)
G104892 NA non-coding upstream 29832 1264427 ~ 1265429 (-)
G104898 NA non-coding upstream 43061 1277656 ~ 1278166 (-)
G105220 NA other upstream 99391 1333986 ~ 1342335 (-)
G105285 NA other upstream 306135 1540730 ~ 1541706 (-)
G105340 NA other upstream 406672 1641267 ~ 1641732 (-)
G105427 NA other upstream 677997 1912592 ~ 1917188 (-)

Expression


Co-expression Network