G105230


Basic Information

Item Value
gene id G105230
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1363753 ~ 1376441 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU118566
tcacactactagttactgtatgaggtgatctaccatcacactactagttactgtatgagatactctaccatcacactactagttactgtatgagatactctaccaccacactactagttactgtatgagatactctaccatcacacactactagttactgtatgagatactctaccatgacactactagttactgtatgaggtcCTCTACCAtcacacactactagttactgtatgaggtgatctaccatcacactactagttactgtatgagatactctaccatcacactactagttactgtatgagatactctaccatcacacactactagttactgtatgaggtcCTCTACCAttacactactagttactgtatgagatactctaccatgacactactagttactgtatgaggtgatctaccatcacactactagttactgtatgagatactctaccatcacactactagttactgtatgaggtcCTCTACCAtcacacactactagttactgtatgaggtgatctaccatgacactactagttactgtatgaggtgatctaccatgacactactagttactgtatgagatactctaccatcacactactagttactgtatgagatactctaccatcacactactagttactgtatgaggtgatctaccatcacactactagttactgtatgaggtgatctaccatcacactactagttactgtatgaggtgatctaccatcacactactagttactgtatgaggtgatctaccatgacactactagttactgtatgaggtgatctaccatgacactactagttactgtatgagatactctaccatcacactactagttactgtatgaggtgatctaccatcacactactagttactgtatgagatactctaccatgacactactagttactgtatgaggtgatctaccatcacactactagttactgtatgagatactctaccaccacactactagttactgtatgaggtgatctaccatgacactactagttactgtatgaggtgatctaccatcacactactagttactgtatgaggtgatctaccatgacactactagttactgtatgaggtgatctaccatcacactactagttactgtatgagatactctaccatgacactactagttactgtatgaggtgatctaccatcacactactagttactgtatgaggtcctctaccaccacactactagttactgtatgagatactctaccaccacactactagttactgtatgaggtgatctaccatcacactactagttactgtatgagatactctaccatcacactactagttactgtatgagatactctaccatgacactactagttactgcatgaggtactgtactatatagggaatagggctctagagtagtgtactatatagggaatagtgctctagagtagtgtactatatagggaatagggctctagagtagtgtactatatagggaatagtgtgaaCTGTTAAGTTAGTGGAGGAACAACAGCTGATTGAGCTGTGGAAACCACCAACGCTGTGGGTCGGACAGGCTACTCATTCTCCACACACAGACAACGGATCAGAGATTTAAAACACAAACCAATACCACACGCTGTTGGGCTAATATGATTGGGTTTAAAGAAGAGCCAATCATAATTGAGCTACTACAATATCCATTTTTCATATTCCTCAGTCAAGCAACCCCCAACGTTCAGACGCCTTCCCTGTCCCATATTAagcctgttcctgttcctgtcccaTATTAagcctgttcctgttcctgttcctgtcccaTATTAAGCCTGTTCGTGTTCCTGTCCCATATTAagcctgttcctgttcctgttcctgtcccaTATTAagcctgttcctgttcctgttcctgtcccaTATTAagcctgttcctgttcctgtcccaTATTAagcctgttcctgttcctgtcccaTATTAagcctgttcctgttcctgttcctgttcctgttcccatTGAGCATGATCTTAGCATCGTCCAGGAAGCTTATAGGCTAAGGAAGTAGGCTTAATCTGggttgtgcgtgtgtgcatgtgtg
>TU118567
accaccacactactagttactgtatgagatactctaccatgacactactagttactgtatgagatactctaccatgacactactagttactgtatgaggtgatctaccaccacactactagttactgtatgagatactctaccatgacactactagttactgtatgagatactctaccacgacactactagttactgcatgaggtactgtactatatagggaatagggctctagagtagtgtactatatagggaatagtgctctagagtagtgtactatatagggaatagggctctagagtagtgtactatatagggaatagtgtgaaCTGTTAAGTTAGTGGAGGAACAACAGCTGATTGAGCTGTGGAAACCACCAACGCTGTGGGTCGGACAGGCTACTCATTCTCCACACACAGACAACGGATCAGAGATTTAAAACACAAACCAATACCACACGCTGTTGGGCTAATATGATTGGGTTTAAAGAAGAGCCAATCATAATTGAGCTACTACAATATCCATTTTTCATATTCCTCAGTCAAGCAACCCCCAACGTTCAGACGCCTTCCCTGTCCCATATTAagcctgttcctgttcctgtcccaTATTAagcctgttcctgttcctgttcctgtcccaTATTAAGCCTGTTCGTGTTCCTGTCCCATATTAagcctgttcctgttcctgttcctgtcccaTATTAagcctgttcctgttcctgttcctgtcccaTATTAagcctgttcctgttcctgtcccaTATTAagcctgttcctgttcctgtcccaTATTAagcctgttcctgttcctgttcctgttcctgttcccatTGAGCATGATCTTAGCATCGTCCAGGAAGCTTATAGGCTAAGGAAGTAGGCTTAATCTGggttgtgcgtgtgtgcatgtgtg
>TU118568
tcacactactagttactgtatgaggtgatctaccatcacactactagttactgtatgagatactctaccatcacactactagttactgtatgagatactctaccaccacactactagttactgtatgagatactctaccatcacacactactagttactgtatgagatactctaccatgacactactagttactgtatgaggtcCTCTACCAtcacacactactagttactgtatgaggtgatctaccatcacactactagttactgtatgagatactctaccatcacactactagttactgtatgagatactctaccatcacacactactagttactgtatgagatactctaccaccacactactagttactgtatgaggtgatctaccatgacactactagttactgtatgaggtgatctaccatcacactactagttactgtatgagatactctaccatcacactactagttactgtatgagatactctaccatgacactactagttactgtatgagatactctaccatcacatactactagttactgtatgagatactctaccatcacactactagttactgtatgagatactctaccatgacactactagttactgtatgagatactctaccatcacactactagttactgtatgagatactctaccaccacactactagttactg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118566 False 2111 lncRNA 0.50 3 1363753 1376441
TU118567 False 917 lncRNA 0.44 3 1363753 1368002
TU118568 True 691 lncRNA 0.38 2 1375016 1376441

Neighbor

gene id symbol gene type direction distance location
LOC118937319 NA coding downstream 47508 1314565 ~ 1316245 (-)
azi2 azi2 coding downstream 458335 879818 ~ 905418 (-)
eomesb eomesb coding downstream 550563 806150 ~ 813190 (-)
LOC110516483 LOC106573240 coding downstream 572882 727654 ~ 790871 (-)
LOC118937315 NA coding downstream 687241 672497 ~ 676512 (-)
LOC110515934 gadl1 coding upstream 50810 1427251 ~ 1457133 (-)
LOC110515405 LOC106590999 coding upstream 196961 1573402 ~ 1683489 (-)
kiaa1143 k1143 coding upstream 326510 1702951 ~ 1704863 (-)
zdhhc3a zdhhc3 coding upstream 333075 1709516 ~ 1732333 (-)
nrsn1 nrsn1 coding upstream 544569 1921010 ~ 1925939 (-)
G105200 NA non-coding downstream 59010 1304512 ~ 1304743 (-)
G105197 NA non-coding downstream 65107 1298370 ~ 1298646 (-)
G104898 NA non-coding downstream 85587 1277656 ~ 1278166 (-)
G104892 NA non-coding downstream 98324 1264427 ~ 1265429 (-)
G105205 NA non-coding upstream 642 1377083 ~ 1390929 (-)
G105244 NA non-coding upstream 22032 1398473 ~ 1402640 (-)
G105257 NA non-coding upstream 59749 1436190 ~ 1438620 (-)
G105271 NA non-coding upstream 96420 1472861 ~ 1474067 (-)
G105294 NA non-coding upstream 110856 1487297 ~ 1490169 (-)
G105220 NA other downstream 21418 1333986 ~ 1342335 (-)
G105285 NA other upstream 164289 1540730 ~ 1541706 (-)
G105340 NA other upstream 264826 1641267 ~ 1641732 (-)
G105427 NA other upstream 536151 1912592 ~ 1917188 (-)
G105428 NA other upstream 540910 1917351 ~ 1918027 (-)

Expression


Co-expression Network