G104979



Basic Information


Item Value
gene id G104979
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1458688 ~ 1459328 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU118179
tttatagatcggcaggtaagggtgctctcgagcggctagatgttctttaccattcggccatcagatttgccaccaatgctccttataggacacatcactgcactctatactcctctgtaaactggtaatctctgtatacctggcgcaagacccactggttgatgcttatttataaaaccctcttaggcctcactcccccctgtctgagatatctactgcagccctcatcctccatatacaacacctgttctgccagtcacattctgttaaaggtccccaaagcacac

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU118179 True 287 lncRNA 0.48 2 1458688 1459328

Neighbor


gene id symbol gene type direction distance location
LOC118937323 NA coding upstream 32411 1424316 ~ 1426453 (+)
tgfbr2b LOC106606173 coding upstream 67752 1309202 ~ 1390936 (+)
rbms3 rbms3 coding upstream 227153 1023461 ~ 1231535 (+)
LOC110515032 LOC106606177 coding upstream 233784 1222130 ~ 1224904 (+)
LOC118936923 NA coding upstream 489160 968616 ~ 969528 (+)
LOC118937324 NA coding downstream 110982 1570310 ~ 1573421 (+)
LOC118937327 NA coding downstream 128854 1585657 ~ 1588650 (+)
LOC118937328 NA coding downstream 129492 1588820 ~ 1589368 (+)
LOC118937325 NA coding downstream 145812 1605140 ~ 1606773 (+)
gpd1l LOC105023484 coding downstream 224233 1683561 ~ 1698369 (+)
G104963 NA non-coding upstream 5855 1452188 ~ 1452833 (+)
G104959 NA non-coding upstream 9248 1448721 ~ 1449440 (+)
G104955 NA non-coding upstream 13525 1444535 ~ 1445163 (+)
G104948 NA non-coding upstream 49914 1407391 ~ 1408774 (+)
G104981 NA non-coding downstream 1209 1460537 ~ 1463337 (+)
G104986 NA non-coding downstream 17232 1476560 ~ 1479662 (+)
G104989 NA non-coding downstream 24609 1483937 ~ 1484619 (+)
G104992 NA non-coding downstream 32974 1492302 ~ 1493023 (+)
G104997 NA non-coding downstream 52964 1512292 ~ 1514245 (+)
G104761 NA other upstream 304939 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 586173 860459 ~ 872515 (+)
G104092 NA other upstream 757417 690046 ~ 701271 (+)
G103851 NA other upstream 1277666 174996 ~ 181022 (+)
G105036 NA other downstream 239745 1699073 ~ 1700431 (+)
G105042 NA other downstream 249641 1708969 ~ 1710557 (+)
G106019 NA other downstream 1061388 2520716 ~ 2527972 (+)
G106122 NA other downstream 1258633 2717961 ~ 2718525 (+)
G106240 NA other downstream 1515495 2974823 ~ 3039475 (+)

Expression



Co-expression Network