G105294


Basic Information

Item Value
gene id G105294
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1487297 ~ 1490169 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU118680
GTTAATTAGGATAATAAactattctgaacaaaaatataaacgcaacatgcaaacaatttcaaagattttactgagttacagttcacataaagaaatcagtcaattgaaataaattcattaggtcctaatttatggatctaaggatttcacatgactgggtctGGTGTGCAACCCTGGTTGTCAGGTAAACATCACTGATATCTAGCTCTGTAGAGGGATATGACAGTCAGTCAGGTAAACATCACTGATATCTAGCTCTGTAGAGGGATATGACAGTCAGTCAGgtaaacATCACTGATATCTAGCTCTGTAGAGGGATATGACAGTCAGTCAGGTAAACATCACTGATATCTAGCTCTGTAGAGGGatatgacagtcagtcagtcaggtaaacATCAGTGATATCTAGCTCTGTAGAGGGatatgacagtcagtcagtcaggtaaacATCAGTGATATCTAGCTCTGTAGAGGGATATGACAGTCAGTCAGGTAAACATCACTGATATCTAGCTCTGTAGAGGGATAAGACAGTCAGTCAGGTAAACATCAGTGATATCTAGATCTGTAGAGGGATATGA
>TU118681
CTGTAGAGGGatatgacagtcagtcagtcaggtaaacATCAGTGATATCTAGCTCTGTAGAGGGATATGACAGTCAGTCAGGTAAACATCAGTGATATCTAGCTCTGTAGAGGGatatgacagtcagtcagtcaggtaaacATCAGTGATATCTAGCTCTGTAGAGGGATATGACAGTCAGTCAGGTAAACATCAGTGATATCTAGCTCTGTAGAGGGATATGACAGTCAGTCAGGTAAACATCAGTGATATCTAGCTCTGTAGAGGGATATGACAGTCAGTCAGGTAAACATCAGTGATATCTAGCTCTGTAGAGGGatatgacagtcagtcagtcaggtaaacATCAGTGATATCTAGCTCTGTAGAGGGATATGACAGTCAGTCAGGTAAACATCAGTGATATCTAGCTCTGTAGAGGGATATGACAGTCAGTCAGGTAAACATCAGTGATATCTAGCTCTGTAGAGGGATATGACAGTCAGTCAGGTAAACATCAGTGATATCTAGCTCTGTAGAGGGatatgacagtcagtcagtcaggtaaacATCACTGATATCTAGCTCTGTAGAGGGATATGACAGTCAGTCAGGTAAACATCACTGATATCTAGCTCTGTAGAGGGatatgacagtcagtcagtcaggtaaacATCAGTGATATCTAGCTCTGTAGAGGGATATGACAGTCAGTCAGGTAAACATCACTGATATCTAGCTCTGTAGAGGGATAAGACAGTCAGTCAGGTAAACATCAGTGATATCTAGATCTGTAGAGGGATATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118680 False 581 lncRNA 0.40 3 1487297 1490169
TU118681 True 786 lncRNA 0.44 2 1487297 1489612

Neighbor

gene id symbol gene type direction distance location
LOC110515934 gadl1 coding downstream 30164 1427251 ~ 1457133 (-)
LOC118937319 NA coding downstream 171052 1314565 ~ 1316245 (-)
azi2 azi2 coding downstream 581879 879818 ~ 905418 (-)
eomesb eomesb coding downstream 674107 806150 ~ 813190 (-)
LOC110516483 LOC106573240 coding downstream 696426 727654 ~ 790871 (-)
LOC110515405 LOC106590999 coding upstream 83233 1573402 ~ 1683489 (-)
kiaa1143 k1143 coding upstream 212782 1702951 ~ 1704863 (-)
zdhhc3a zdhhc3 coding upstream 219347 1709516 ~ 1732333 (-)
nrsn1 nrsn1 coding upstream 430841 1921010 ~ 1925939 (-)
LOC118937333 NA coding upstream 812467 2302636 ~ 2303881 (-)
G105271 NA non-coding downstream 13230 1472861 ~ 1474067 (-)
G105257 NA non-coding downstream 48677 1436190 ~ 1438620 (-)
G105244 NA non-coding downstream 84657 1398473 ~ 1402640 (-)
G105205 NA non-coding downstream 96368 1377083 ~ 1390929 (-)
G105230 NA non-coding downstream 110856 1363753 ~ 1376441 (-)
G105299 NA non-coding upstream 12146 1502315 ~ 1502980 (-)
G105301 NA non-coding upstream 14899 1505068 ~ 1505682 (-)
G105283 NA non-coding upstream 15640 1505809 ~ 1508116 (-)
G105305 NA non-coding upstream 25514 1515683 ~ 1516701 (-)
G105308 NA non-coding upstream 31328 1521497 ~ 1522631 (-)
G105220 NA other downstream 144962 1333986 ~ 1342335 (-)
G105285 NA other upstream 50561 1540730 ~ 1541706 (-)
G105340 NA other upstream 151098 1641267 ~ 1641732 (-)
G105427 NA other upstream 422423 1912592 ~ 1917188 (-)
G105428 NA other upstream 427182 1917351 ~ 1918027 (-)

Expression


Co-expression Network