G105001


Basic Information

Item Value
gene id G105001
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1538977 ~ 1540210 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU118215
ATTAAACTCTAACCCAGTATATTAAACCCTAACCTAGTATATTAAACCCTAACCCAGTATATTAAACCCTAACCCAGTATATTAaaccctaacccagtgtgttaaacCCTAGCCCAGTATATTAAACCTTAACCCAGTATATTAAACCCTAACCCAGTATATTAAACCCtaaccctgctctctgtctccccctagtGGCCCTGTATGCCATCAGTATATTAAACCCTAACCCAGTATATTAAACTCTAACCCAGTGTATTAAACCCTAACCCAGTATATTAAACCCTAACCCAGTATATTAAACCCTAACCCAGTATATTAAACCCTAACCCAGTatattaaaccctaaccctGTATATTAAACCCTAACCCAGTATATTAAACCCTAACCCAGTATATTAAACCCTAACCCAGTATATTAAACTCtaaccctgctctctgtctccccctagtGGCCCTGTATGCCATCAGTATATTAAACCCTAACCCAGTATATTAAACTCTAACCCAGTGT
>TU118214
CTAACCCAGTATATTAaaccctaacccagtgtgttaaacCCTAACCCAGTATATTAAACCCTAACCCAGTATATTAAACCCTAACCCAGTATATTAAACTCtaaccctgctctctgtctccccctagtGGCCCTGTATGCCATCAGTATATTAAACCCTAACCCAGTATATTAAACTCTAACCCAGTATATTAAACTCTAACCCAGTATATTAAACCCTAACCCAGTATATTAAACCCTAACCCAGTATATTAAACCCTAACCCAGTATATTAAACTCtaaccctgctctctgtctccccctagtGGCCCTGTATGCCATCAGTATATTAAACCCTAACCCAGTATATTAAACTCTAACCCAGTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118215 False 514 lncRNA 0.42 2 1538977 1540210
TU118214 True 366 lncRNA 0.52 2 1539605 1540210

Neighbor

gene id symbol gene type direction distance location
LOC118937323 NA coding upstream 112700 1424316 ~ 1426453 (+)
tgfbr2b LOC106606173 coding upstream 148041 1309202 ~ 1390936 (+)
rbms3 rbms3 coding upstream 307442 1023461 ~ 1231535 (+)
LOC110515032 LOC106606177 coding upstream 314073 1222130 ~ 1224904 (+)
LOC118936923 NA coding upstream 569449 968616 ~ 969528 (+)
LOC118937324 NA coding downstream 30100 1570310 ~ 1573421 (+)
LOC118937327 NA coding downstream 47972 1585657 ~ 1588650 (+)
LOC118937328 NA coding downstream 48610 1588820 ~ 1589368 (+)
LOC118937325 NA coding downstream 64930 1605140 ~ 1606773 (+)
gpd1l LOC105023484 coding downstream 143351 1683561 ~ 1698369 (+)
G104999 NA non-coding upstream 23936 1514533 ~ 1515041 (+)
G104997 NA non-coding upstream 24732 1512292 ~ 1514245 (+)
G104992 NA non-coding upstream 45954 1492302 ~ 1493023 (+)
G104989 NA non-coding upstream 54358 1483937 ~ 1484619 (+)
G104986 NA non-coding upstream 59315 1476560 ~ 1479662 (+)
G105014 NA non-coding downstream 49385 1589595 ~ 1591453 (+)
G105019 NA non-coding downstream 57376 1597586 ~ 1597987 (+)
G105020 NA non-coding downstream 57975 1598185 ~ 1599541 (+)
G105049 NA non-coding downstream 93527 1633737 ~ 1634417 (+)
G104761 NA other upstream 385228 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 666462 860459 ~ 872515 (+)
G104092 NA other upstream 837706 690046 ~ 701271 (+)
G103851 NA other upstream 1357955 174996 ~ 181022 (+)
G105036 NA other downstream 158863 1699073 ~ 1700431 (+)
G105042 NA other downstream 168759 1708969 ~ 1710557 (+)
G106019 NA other downstream 980506 2520716 ~ 2527972 (+)
G106122 NA other downstream 1177751 2717961 ~ 2718525 (+)
G106240 NA other downstream 1434613 2974823 ~ 3039475 (+)

Expression


Co-expression Network