G105020


Basic Information

Item Value
gene id G105020
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1598185 ~ 1599541 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU118240
CAGTAGTTTACACATCAGTTACCACAGTAGTTTACACACCAGTTAACACAGTAGTTTACATCAGTTACCACAGTAGTTTACACATCAGTTACCACAGTAGTTTACACACCAGTTATCACAGTAGTTTAGCAGTTAACACAGTAGTTTACACACCAGTTACCACAGTAGTTTACACACCAGTTACCACAGTAGTTTACACCAGTTATCACAGTAGTTTAGCAGTTAACACAGTAGTTTACACACCAGTTAACACAGTAGTTTACACACCAGTTAACACAGTAGTTTACACACCAGTTACCACAGTAGTTTAC
>TU118241
AGTTTACATCAGTTACCACAGTAGATTACATCAGTTACCACAGTAGTTTACACACCAGTTAACACAGTAGTTTACATCAGTTACCACAGTAGTTTACACATCAGTTACCACAGTAGTTTACACACCAGTTATCACAGTAGTTTAGCAGTTAACACAGTAGTTTACACACCAGTTACCACAGTAGTTTACACACCAGTTACCACAGTAGTTTACACCAGTTATCACAGTAGTTTAGCAGTTAACACAGTAGTTTACACCAGTTACCACAGTAGTTTACACCAGTTATCACAGTAGTTTATCAGTTAACACAGTAGTTTACACCAGTTACCACAGTAGTTTACATCAGTACGGAGGGAATGACCTACCTAACCTTAGTTGAACGCACtgcctgtaagtctctctggataacatTGTCTGCTTAATGACGCAAATGTATATCAGCAATTATACAAATCTATTTCAAAACAGTGTAACAT
>TU118242
ACACAGTAGTTTACACACCAGTTAACACAGTAGTTTACACACCAGTTAACACAGTAGTTTACACCAGGCAACACAGTAGTTTACACCAGTTAACACAGTAGTTTACATCAGTTACCACAGTAGTTTACACATCAGTTACCACAGTAGTTTACACACCAGTTATCACAGTAGTTTAGCAGTTAACACAGTAGTTTACACCAGTTACCACAGTAGTTTACACCAGTTATCACAGTAGTTTATCAGTTAACACAGTAGTTTACACCAGTTACCACAGTAGTTTACATCAGTACGGAGGGAATGACCTACCTAACCTTAGTTGAACGCACtgcctgtaagtctctctggataacatTGTCTGCTTAATGACGCAAATGTATATCAGCAATTATACAAATCTATTTCAAAACAGTGTAACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118240 False 311 lncRNA 0.37 2 1598185 1599210
TU118241 False 476 lncRNA 0.37 3 1598721 1599541
TU118242 True 417 lncRNA 0.40 2 1598853 1599541

Neighbor

gene id symbol gene type direction distance location
LOC118937328 NA coding upstream 8817 1588820 ~ 1589368 (+)
LOC118937327 NA coding upstream 9535 1585657 ~ 1588650 (+)
LOC118937324 NA coding upstream 24764 1570310 ~ 1573421 (+)
stt3b stt3b coding upstream 33880 1456336 ~ 1564305 (+)
LOC118937323 NA coding upstream 171908 1424316 ~ 1426453 (+)
LOC118937325 NA coding downstream 5599 1605140 ~ 1606773 (+)
gpd1l LOC105023484 coding downstream 84020 1683561 ~ 1698369 (+)
tmem42a LOC106595323 coding downstream 105348 1704889 ~ 1707675 (+)
LOC110514512 LOC105016610 coding downstream 145757 1745298 ~ 1794938 (+)
slc6a3 slc6a3 coding downstream 217267 1816808 ~ 1853570 (+)
G105019 NA non-coding upstream 198 1597586 ~ 1597987 (+)
G105014 NA non-coding upstream 6732 1589595 ~ 1591453 (+)
G105001 NA non-coding upstream 57975 1538977 ~ 1540210 (+)
G104999 NA non-coding upstream 83144 1514533 ~ 1515041 (+)
G105049 NA non-coding downstream 34196 1633737 ~ 1634417 (+)
G105052 NA non-coding downstream 41281 1640822 ~ 1641037 (+)
G105058 NA non-coding downstream 49416 1648957 ~ 1649297 (+)
G105060 NA non-coding downstream 50066 1649607 ~ 1650827 (+)
G105063 NA non-coding downstream 62047 1661588 ~ 1662075 (+)
tgfbr2b LOC106606173 other upstream 245322 1309202 ~ 1390936 (+)
G104761 NA other upstream 444436 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 725670 860459 ~ 872515 (+)
G104092 NA other upstream 896914 690046 ~ 701271 (+)
G103851 NA other upstream 1417163 174996 ~ 181022 (+)
G105036 NA other downstream 99532 1699073 ~ 1700431 (+)
G105042 NA other downstream 109428 1708969 ~ 1710557 (+)
G106019 NA other downstream 921175 2520716 ~ 2527972 (+)
G106122 NA other downstream 1118420 2717961 ~ 2718525 (+)
G106240 NA other downstream 1375282 2974823 ~ 3039475 (+)

Expression


Co-expression Network