XLOC_020779 (ncln)


Basic Information

Item Value
gene id XLOC_020779
gene name ncln
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5233396 ~ 5252012 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040975
CCTCCCCTGCGACGCCTGACAGCTCGAGCTCGCCTCGTCGGTCATTCATTCGGTGTTTTCTCTGTTTCTGTCGGTCGGAATCTCCCGCAGCGGCTCCAGCATGTTCGAGGAGGCTGGTGAGGTGTTGGAGAACATGCTGAAGGTGTCGTTCCCGCTCAGCCTGGTGCTGTTTCTGGTGCTCGTGTGTCCGCTGCGCGCGGAAGCGGCGCATGAGTTCAGTGTGTACCGCATGCAGCAGTACGACCTGCAGGGGCAAACCTACGGTTCACGTAATGCCATCTTGAACACGGAGGCTCGTACGGTGGAGGCTGAAGTGCTGAGTCGTCGCTGTGTGATGATGCGGCTCGCTGATTTCTCCTATGAGAAATACCAGAAGGCTCTGCGTCAGTCAGCGGGAGCGGTGGTCATCATCCTGCCGCACAACATGTCCACCCTACCCCAGGACATAGTGCAGCAGTTCATGGAGCTGGAGCCGGAGCTGTTGGCCACCGAGACCATCGTGCCGGTGTACTTCGCTCTGGAGGACGAGGAGCTGCTGTCTAtctacacacagacacagatcTCCTCATCCTCACAGGGGTCTTCATCCGCCGCTGAAGTGCTGCTTCATACGGCTACAGCTAATGGTTTTCAGATGGTGACCAGTGGAGCTCAGAGTAAAGCTGTCAGTGACTGGGCTATTACTAGTCTAGAGGGCCGCCTCACAGGGTCAGGAGGAGAAGATCTGCCCACCATCGTCCTGGTGGCTCATTATGACTCTTTCGGAGTCGCTCCGTGGCTGTCGTATGGCGCGGACTCAAACGGCAGTGGCGTCGCTATACTGCTGGAGCTTGCGCGACTGTTTTCCAGACTGTATTCCTACAAGAGGACTCACGCTGGATATAACCTGCTGTTTTTCTTGTCGGGAGGCGGAAAGTTCAACTATCAAGGCACTAAACGCTGGCTAGAGGACAATCTGGATCACACAGATGCCAGTCTGCTCCAGGACAATGTGGCGTTTGTCTTGTGTCTGGACACTCTAGGAAACAGCGATAACCTTCACCTCCATGTGTCCAAACCACCAAAAGAGGGAAGCCCTCAGTACACCCTGCTCAAAGAGCTAGAAACTGTTGTGGCCCATCAGCACCCCGACCTGAAGTTCGCGATGGTCCACAAGAAGATCAACCTGGCGGATGACACTCTGGCATGGGAGCACGAGCGCTTCGGGATCCGCCGCCTGCCCGCCTTCACCCTGTCCCACCTGGAGAGCCACCGCAGCCCCGCGCGCCACTCCATCATGGACATGCGGTCAGTGTCGCCCTCTCTGGAGGGGGCAGGAGAGGCCACCACTGGgccTCATGTGGATCTGGGGAAACTCAGTCGTAACACTAAAGTTATTGCAGAAACTCTGGCCAGAGTCATATATAACCTGACGGAGAAGGGCGTCACCGGAGACCTGGAGATCTTCACTGAACAGATGGTGCAGGAGGATCAGCTGGCGTCTCTGGTGGACTGGTTGACCGCTCAGCCTCGAGCCGCTCAGCTTCTGGATAAAGACAGCAGCATCATCAACACGCTGGAGCATCAGCTCAGCCGATACCTGAAGGACGTCAAGAGACACTTGGTGCGAGCAGACAAGAGagaCCCTGAGTTTGTGTTTTATGATCAGCTCAAGCAGACCATGAATGCTTACAGGGTAAAACCAGCAATCTTTGACCTGCTGTTGGCCGTCTGTATCGCATCTTATCTCGGAGTGCTGTATTTGGCCATTCAGAATTTTGGACTCCTGTATGGTTTTCTGCGCAGAGTCACGGCTCCTCGGGTCAAGCAGCACTGAGCGACTCGTCACTTCATGCGCCTGCAATACGAAACAGAGCCAAGTGTGTGTTTGCATTCTTTATATCACTCACAGTTTGTCCGATTGATCGACTGATTGCCTTTTTGAGAATGAACGTTGATTTTTCATGCCAAGTGTTCATCCACTACATCTCCGCTAGCCTTCGAAGTCTTCCTCGTCTCAGCGTTGCCTCAAGTCCTGTATTCTTAAAAAATACAATCCGCAATTGTTCGAATGCAGTTGAGTTCATTTCGATTGTTTCGTGGAATCAATTGAGGATTGTAGTTTCCTGAAAGCCCTTCCTCGTGTGGTTTTTCTTCTCTGGCAGCTACTGTAAAGTGGGCCAAAATGGTTGCTGGTTGGGTTGACGCTCTTCAATCTTCGAAATGCTGATTCTTTTCAGAGCGAGTATTAAAATGATGTCTAAAATTATGTTCGGAAACATTTGGCATTTCATGTTTCGCTTTTATTCCTTCGGTTTTTCCTCAGAGTTATTTACTTAAGTTAGTAATTCTGTCATTTCTTTCTTGTCTTGTTTTGACATCCGAAGTCCAGTTCTGCTTCTCATCGGGAGGTAGTTTGGTACAGATTTGCTGTTATTTATACTTCGACATGcactgatttgttttatgtttattctcTGAATTTGATTTGACATTACAAATCAAGAGGTACATAAACTTGATTCTCGAGGATGaagaaatataaagaaaaataaaggcaTTTGTTGAATGAAAA
>TCONS_00040976
CTGAAATCCTCCCCTGCGACGCCTGACAGCTCGAGCTCGCCTCGTCGGTCATTCATTCGGTGTTTTCTCTGTTTCTGTCGGTCGGAATCTCCCGCAGCGGCTCCAGCATGTTCGAGGAGGCTGGTGAGGTGTTGGAGAACATGCTGAAGGTGTCGTTCCCGCTCAGCCTGGTGCTGTTTCTGGTGCTCGTGTGTCCGCTGCGCGCGGAAGCGGCGCATGAGTTCAGTGTGTACCGCATGCAGCAGTACGACCTGCAGGGGCAAACCTACGGTTCACGTAATGCCATCTTGAACACGGAGGCTCGTACGGTGGAGGCTGAAGTGCTGAGTCGTCGCTGTGTGATGATGCGGCTCGCTGATTTCTCCTATGAGAAATACCAGAAGGCTCTGCGTCAGTCAGCGGGAGCGGTGGTCATCATCCTGCCGCACAACATGTCCACCCTACCCCAGGACATAGTGCAGCAGTTCATGGAGCTGGAGCCGGAGCTGTTGGCCACCGAGACCATCGTGCCGGTGTACTTCGCTCTGGAGGACGAGGAGCTGCTGTCTAtctacacacagacacagatcTCCTCATCCTCACAGGGGTCTTCATCCGCCGCTGAAGTGCTGCTTCATACGGCTACAGCTAATGGTTTTCAGATGGTGACCAGTGGAGCTCAGAGTAAAGCTGTCAGTGACTGGGCTATTACTAGTCTAGAGGGCCGCCTCACAGGGTCAGGAGGAGAAGATCTGCCCACCATCGTCCTGGTGGCTCATTATGACTCTTTCGGAGTCGCTCCGTGGCTGTCGTATGGCGCGGACTCAAACGGCAGTGGCGTCGCTATACTGCTGGAGCTTGCGCGACTGTTTTCCAGACTGTATTCCTACAAGAGGACTCACGCTGGATATAACCTGCTGTTTTTCTTGTCGGGAGGCGGAAAGTTCAACTATCAAGGCACTAAACGCTGGCTAGAGGACAATCTGGATCACACAGATGCCAGTCTGCTCCAGGACAATGTGGCGTTTGTCTTGTGTCTGGACACTCTAGGAAACAGCGATAACCTTCACCTCCATGTGTCCAAACCACCAAAAGAGGGAAGCCCTCAGTACACCCTGCTCAAAGAGCTAGAAACTGTTGTGGCCCATCAGCACCCCGACCTGAAGTTCGCGATGGTCCACAAGAAGATCAACCTGGCGGATGACACTCTGGCATGGGAGCACGAGCGCTTCGGGATCCGCCGCCTGCCCGCCTTCACCCTGTCCCACCTGGAGAGCCACCGCAGCCCCGCGCGCCACTCCATCATGGACATGCGGTCAGTGTCGCCCTCTCTGGAGGGGGCAGGAGAGGCCACCACTGGgccTCATGTGGATCTGGGGAAACTCAGTCGTAACACTAAAGTTATTGCAGAAACTCTGGCCAGAGTCATATATAACCTGACGGAGAAGGGCGTCACCGGAGACCTGGAGATCTTCACTGAACAGATGCAGGTGCAGGAGGATCAGCTGGCGTCTCTGGTGGACTGGTTGACCGCTCAGCCTCGAGCCGCTCAGCTTCTGGATAAAGACAGCAGCATCATCAACACGCTGGAGCATCAGCTCAGCCGATACCTGAAGGACGTCAAGAGACACTTGGTGCGAGCAGACAAGAGagaCCCTGAGTTTGTGTTTTATGATCAGCTCAAGCAGACCATGAATGCTTACAGGGTAAAACCAGCAATCTTTGACCTGCTGTTGGCCGTCTGTATCGCATCTTATCTCGGAGTGCTGTATTTGGCCATTCAGAATTTTGGACTCCTGTATGGTTTTCTGCGCAGAGTCACGGCTCCTCGGGTCAAGCAGCACTGAGCGACTCGTCACTTCATGCGCCTGCAATACGAAACAGAGCCAAGTGTGTGTTTGCATTCTTTATATCACTCACAGTTTGTCCGATTGATCGACTGATTGCCTTTTTGAGAATGAACGTTGATTTTTCATGCCAAGTGTTCATCCACTACATCTCCGCTAGCCTTCGAAGTCTTCCTCGTCTCAGCGTTGCCTCAAGTCCTGTATTCTTAAAAAATACAATCCGCAATTGTTCGAATGCAGTTGAGTTCATTTCGATTGTTTCGTGGAATCAATTGAGGATTGTAGTTTCCTGAAAGCCCTTCCTCGTGTGGTTTTTCTTCTCTGGCAGCTACTGTAAAGTGGGCCAAAATGGTTGCTGGTTGGGTTGACGCTCTTCAATCTTCGAAATGCTGATTCTTTTCAGAGCGAGTATTAAAATGATGTCTAAAATTATGTTCGGAAACATTTGGCATTTCATGTTTCGCTTTTATTCCTTCGGTTTTTCCTCAGAGTTATTTACTTAAGTTAGTAATTCTGTCATTTCTTTCTTGTCTTGTTTTGACATCCGAAGTCCAGTTCTGCTTCTCATCGGGAGGTAGTTTGGTACAGATTTGCTGTTATTTATACTTCGACATGcactgatttgttttatgtttattctcTGAATTTGATTTGACATTACAAATCAAGAGGTACATAAACTTGATTCTCGAGGATGaagaaatataaagaaaaataaaggcaTTTGTTGAATG

Function

symbol description
ncln Involved in negative regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry. Acts upstream of or within enteric nervous system development and regulation of signal transduction. Located in endoplasmic reticulum membrane. Is expressed in central nervous system and intestine. Orthologous to human NCLN (nicalin).

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0009966 regulation of signal transduction biological_process
GO:1900176 negative regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8788 Involved in negative regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry. Acts upstream of or within enteric nervous system development and regulation of signal transduction. Located in endoplasmic reticulum membrane. Is expressed in central nervous system and intestine. Orthologous to human NCLN (nicalin).

Ensembl:

ensembl_id ENSDARG00000058861

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040975 False 2554 mRNA 0.51 15 5233396 5252005
TCONS_00040976 True 2560 mRNA 0.51 15 5233400 5252012

Neighbor

gene id symbol gene type direction distance location
XLOC_020778 tnfaip8l1 coding downstream 61567 5153461 ~ 5171829 (-)
XLOC_020776 CR936300.2 coding downstream 70263 5123914 ~ 5163133 (-)
XLOC_020777 CR936300.1 coding downstream 88374 5140530 ~ 5145022 (-)
XLOC_020775 zfr2 coding downstream 133572 5056288 ~ 5099824 (-)
XLOC_020774 matk coding downstream 178623 5036179 ~ 5054773 (-)
XLOC_020780 NA coding upstream 15511 5267523 ~ 5274962 (-)
XLOC_020781 NA coding upstream 60959 5312971 ~ 5315589 (-)
XLOC_020782 s1pr4 coding upstream 68403 5320415 ~ 5323482 (-)
XLOC_020783 zgc:194627 coding upstream 181081 5433093 ~ 5441893 (-)
XLOC_020784 NA coding upstream 201231 5453243 ~ 5463115 (-)
XLOC_020765 NA non-coding downstream 379581 4853062 ~ 4853815 (-)
XLOC_020756 NA non-coding downstream 498059 4733007 ~ 4735337 (-)
XLOC_020752 CU074310.1 non-coding downstream 920278 4311803 ~ 4313118 (-)
XLOC_020750 NA non-coding downstream 1346712 3883607 ~ 3886684 (-)
XLOC_020788 NA non-coding upstream 372361 5624373 ~ 5631081 (-)
XLOC_020792 NA non-coding upstream 449248 5701260 ~ 5724131 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_10936461_10939911 NA coding CI01000030 null 10936461 ~ 10940790 (+)
bowfin (Amia calva) AMCG00005961 ncln,LOC106573831 coding CM030142.1 CM030142.1 12267085 ~ 12280796 (-)