XLOC_020780



Basic Information


Item Value
gene id XLOC_020780
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5267523 ~ 5274962 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00042306
ttcatgagaatAACCGTTGCCGTAGGACTACCGATTCGCGCGCAGCCGAGCTGAGGATGATCTGGGATCATATTTGGGTGGTGTGTGCTTCAAGCCTCCTCCGCCTTTAGGAACAAGTTGACGTGGCCAATTCATCATCTCTCCCTCGACGCTCCATCATTCGCACAGGCAATCCATCAAGAGCAGACGCTGAGAGACACGGCAGAAGAGAAGAGAGCAACGCTAATCTACAGTCACCGCTCAGGGGAGTCTCTCGAGAGACGTTTCCACTTCAACTCAGTGTTGCAGCTTTAATGCAGATGTAGATGATATCTCAATTACAAACATCAGATACCCTAATAAAATATTACTCCAG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00042306 True 355 lncRNA 0.48 2 5267523 5274962

Neighbor


gene id symbol gene type direction distance location
XLOC_020779 ncln coding downstream 15511 5233396 ~ 5252012 (-)
XLOC_020778 tnfaip8l1 coding downstream 95694 5153461 ~ 5171829 (-)
XLOC_020776 CR936300.2 coding downstream 104390 5123914 ~ 5163133 (-)
XLOC_020777 CR936300.1 coding downstream 122501 5140530 ~ 5145022 (-)
XLOC_020775 zfr2 coding downstream 167699 5056288 ~ 5099824 (-)
XLOC_020781 NA coding upstream 38009 5312971 ~ 5315589 (-)
XLOC_020782 s1pr4 coding upstream 45453 5320415 ~ 5323482 (-)
XLOC_020783 zgc:194627 coding upstream 158131 5433093 ~ 5441893 (-)
XLOC_020784 NA coding upstream 178281 5453243 ~ 5463115 (-)
XLOC_020785 CABZ01064972.1 coding upstream 208626 5483588 ~ 5518117 (-)
XLOC_020765 NA non-coding downstream 413708 4853062 ~ 4853815 (-)
XLOC_020756 NA non-coding downstream 532186 4733007 ~ 4735337 (-)
XLOC_020752 CU074310.1 non-coding downstream 954405 4311803 ~ 4313118 (-)
XLOC_020750 NA non-coding downstream 1380839 3883607 ~ 3886684 (-)
XLOC_020788 NA non-coding upstream 349411 5624373 ~ 5631081 (-)
XLOC_020792 NA non-coding upstream 426298 5701260 ~ 5724131 (-)
XLOC_020793 NA non-coding upstream 448366 5723328 ~ 5825199 (-)

Expression



Co-expression Network