G105030 (k1143)


Basic Information

Item Value
gene id G105030
gene name k1143
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1702955 ~ 1704846 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU118259
CGTAAGGCCTTGATGTATTTTAATAGTTACATTTCAAACTTATTCAACTAAACATCATcataacaaaaaaacacacaatacaatCACAGAAAAATCCAACACCTCGGCATCAAACCAACGCAGTGGTTTAACTAAAGACATCTTTTGCTGCTCCGTTGTCGAAGCTAAAACATATTTGTACATCCAATGAATTATTGACTGTAGAAAAGTATCACATCACAACGCTCcagactatatatatttttttttaaaccaaaagCCACCAGCTCATTGCTTCCCCCATTTAGTAGCTGTTGTCACCTTGATAAAATCTTCGATCCAGACTGTGTGTTGGCTGTATGAAAAAGTGCAGAGGATCCACTGAAGGACGGATGACTACAGTTGTAATGGATGGATAATAGGCCCACGGTGAGTCACTATACAACATTTCAAACAGCAGAGACATGTCTTATAGTCGACAAAGAATAACAGCATGCATCTTATGTAATCTAAAAGATCTTTGATCGTGAATGAGATTGAAGGGGTTTGTTTCACATACATGTCCAGATTCCACCTCCAAAAAAGAGGGGATGACCCGTAATGTCTAAGGATCTTAGTCTAGTGGGACAAACTACGATGTGGAGCTATTCTATGTTGGTTTTTTTTGCCCATAGTAAAAACCAACAACCGCAGTAGATCAGTTCCATCATCCATGAGCGGTTGATTGCTCTAGTCTGATATCCCTGCGGTGAATTCACTTCTagtcctcatcctcatcctctccGAAAGAGAGAAGACTCTTGTTCTTCACCTTCTTTTCAGACTTCTCCTTtttctcttcatctcctccttcactctttccttcactcttcttcttcttgttgttgttagAGCTGGCGGTGATGCCCTGGAACTTGTCGGAGGAGCGCTTCGTGGGCTTCTTGAACAGGATCTTTCCGTCCGCAGGAGGCTTGTCTTCTGTAGGCAGCAAGGAGAAGAGGCAGatgaaCGCTCAAATCTCCCTTTTTGAGAATGACAACTTGAGGCAGCTCATCTTCACGATCACTGCCACTGTCATCCTCCAAGGCTGGTATCTCTAAACGCTGCGGGAACAGTGACCAGGTTGAATATCACCATATTGACATCATACCAGCAG
>TU118260
CGTAAGGCCTTGATGTATTTTAATAGTTACATTTCAAACTTATTCAACTAAACATCATcataacaaaaaaacacacaatacaatCACAGAAAAATCCAACACCTCGGCATCAAACCAACGCAGTGGTTTAACTAAAGACATCTTTTGCTGCTCCGTTGTCGAAGCTAAAACATATTTGTACATCCAATGAATTATTGACTGTAGAAAAGTATCACATCACAACGCTCcagactatatatatttttttttaaaccaaaagCCACCAGCTCATTGCTTCCCCCATTTAGTAGCTGTTGTCACCTTGATAAAATCTTCGATCCAGACTGTGTGTTGGCTGTATGAAAAAGTGCAGAGGATCCACTGAAGGACGGATGACTACAGTTGTAATGGATGGATAATAGGCCCACGGTGAGTCACTATACAACATTTCAAACAGCAGAGACATGTCTTATAGTCGACAAAGAATAACAGCATGCATCTTATGTAATCTAAAAGATCTTTGATCGTGAATGAGATTGAAGGGGTTTGTTTCACATACATGTCCAGATTCCACCTCCAAAAAAGAGGGGATGACCCGTAATGTCTAAGGATCTTAGTCTAGTGGGACAAACTACGATGTGGAGCTATTCTATGTTGGTTTTTTTTGCCCATAGTAAAAACCAACAACCGCAGTAGATCAGTTCCATCATCCATGAGCGGTTGATTGCTCTAGTCTGATATCCCTGCGGTGAATTCACTTCTagtcctcatcctcatcctctccGAAAGAGAGAAGACTCTTGTTCTTCACCTTCTTTTCAGACTTCTCCTTtttctcttcatctcctccttcactctttccttcactcttcttcttcttgttgttgttagAGCTGGCGGTGATGCCCTGGAACTTGTCGGAGGAGCGCTTCGTGGGCTTCTTGAACAGGATCTTTCCGTCCGCAGGAGGCTTGTCTTCTGTAGGCAGCAAGGAGAAGAGGCAGatgaaAATGACAACTTGAGGCAGCTCATCTTCACGATCACTGCCACTGTCATCCTCCAAGGCTGGTATCTCTAAACGCTGCGGGAACAGTGACCAGGTTGAATATCACCATATTGACATCATACCAGCAG
>TU118261
CGTAAGGCCTTGATGTATTTTAATAGTTACATTTCAAACTTATTCAACTAAACATCATcataacaaaaaaacacacaatacaatCACAGAAAAATCCAACACCTCGGCATCAAACCAACGCAGTGGTTTAACTAAAGACATCTTTTGCTGCTCCGTTGTCGAAGCTAAAACATATTTGTACATCCAATGAATTATTGACTGTAGAAAAGTATCACATCACAACGCTCcagactatatatatttttttttaaaccaaaagCCACCAGCTCATTGCTTCCCCCATTTAGTAGCTGTTGTCACCTTGATAAAATCTTCGATCCAGACTGTGTGTTGGCTGTATGAAAAAGTGCAGAGGATCCACTGAAGGACGGATGACTACAGTTGTAATGGATGGATAATAGGCCCACGGTGAGTCACTATACAACATTTCAAACAGCAGAGACATGTCTTATAGTCGACAAAGAATAACAGCATGCATCTTATGTAATCTAAAAGATCTTTGATCGTGAATGAGATTGAAGGGGTTTGTTTCACATACATGTCCAGATTCCACCTCCAAAAAAGAGGGGATGACCCGTAATGTCTAAGGATCTTAGTCTAGTGGGACAAACTACGATGTGGAGCTATTCTATGTTGGTTTTTTTTGCCCATAGTAAAAACCAACAACCGCAGTAGATCAGTTCCATCATCCATGAGCGGTTGATTGCTCTAGTCTGATATCCCTGCGGTGAATTCACTTCTagtcctcatcctcatcctctccGAAAGAGAGAAGACTCTTGTTCTTCACCTTCTTTTCAGACTTCTCCTTtttctcttcatctcctccttcactctttccttcactcttcttcttcttgttgttgttagAGCTGGCGGTGATGCCCTGGAACTTGTCGGAGGAGCGCTTCGTGGGCTTCTTGAACAGGATCTTTCCGTCCGCAGGAGGCTTGTCTTCTTTATCTGTACCATCCTTTACCTCTTTTATCTGTAACACTTCTTCAGCGCTCAAATCTCCCTTTTTGAGAATGACAACTTGAGGCAGCTCATCTTCACGATCACTGCCACTGTCATCCTCCAAGGCTGGTATCTCTAAACGCTTGGTATGAATGGTGGGTCCTTCCTTAAAGCCAACATCGTTCTTGAATTTCTTTAAAAATGACGGTTCTGCTGGTTTCACCCACGATACGTTCGCTTTCGGACCCTTATTCGTCTTAGCCATTTTGAGAGTTAGAACAAATTAAGGAAACGAAGATAATTTCAGGTTGTGTTTAGCCCGTCGTGTTTATCGTCACATTGAATCGTCATCACCC

Function

NR:

description
uncharacterized protein KIAA1143 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118259 False 1135 lncRNA 0.44 2 1702955 1704314
TU118260 False 1113 lncRNA 0.50 2 1702955 1704314
TU118261 True 1313 lncRNA 0.41 3 1702955 1704846

Neighbor

gene id symbol gene type direction distance location
gpd1l LOC105023484 coding upstream 4586 1683561 ~ 1698369 (+)
LOC118937325 NA coding upstream 96182 1605140 ~ 1606773 (+)
LOC118937328 NA coding upstream 113587 1588820 ~ 1589368 (+)
LOC118937327 NA coding upstream 114305 1585657 ~ 1588650 (+)
LOC118937324 NA coding upstream 129534 1570310 ~ 1573421 (+)
tmem42a LOC106595323 coding downstream 43 1704889 ~ 1707675 (+)
LOC110514512 LOC105016610 coding downstream 40452 1745298 ~ 1794938 (+)
slc6a3 slc6a3 coding downstream 111962 1816808 ~ 1853570 (+)
LOC110511503 LOC106605726 coding downstream 160519 1865365 ~ 1901456 (+)
LOC110516539 NA coding downstream 411707 2116553 ~ 2120455 (+)
G105083 NA non-coding upstream 6530 1695943 ~ 1696425 (+)
G105078 NA non-coding upstream 23468 1679058 ~ 1679487 (+)
G105074 NA non-coding upstream 29162 1673026 ~ 1673793 (+)
G105069 NA non-coding upstream 36446 1666029 ~ 1666509 (+)
G105068 NA non-coding upstream 37532 1665138 ~ 1665423 (+)
G105091 NA non-coding downstream 17149 1721995 ~ 1722691 (+)
G105107 NA non-coding downstream 51535 1756381 ~ 1757197 (+)
G105111 NA non-coding downstream 61963 1766809 ~ 1771032 (+)
G105043 NA non-coding downstream 93652 1798498 ~ 1799324 (+)
G105039 NA non-coding downstream 94827 1799673 ~ 1799993 (+)
G105036 NA other upstream 2524 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 350092 1309202 ~ 1390936 (+)
G104761 NA other upstream 549206 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 830440 860459 ~ 872515 (+)
G104092 NA other upstream 1001684 690046 ~ 701271 (+)
G105042 NA other downstream 4123 1708969 ~ 1710557 (+)
G106019 NA other downstream 815870 2520716 ~ 2527972 (+)
G106122 NA other downstream 1013115 2717961 ~ 2718525 (+)
G106240 NA other downstream 1269977 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 1501951 3006312 ~ 3391033 (+)

Expression


Co-expression Network