G105091


Basic Information

Item Value
gene id G105091
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1721995 ~ 1722691 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU118345
ACGTAGTTACACAAACTCTAAGTCATTTTCAGGGCATTTGACAACTTAAAAACATCTTAATTCCTAACTTTCCAATAGGTAGTGTGTGTTGGCTACTGGTCTGTGTTATTGCAGCAGGCTGAAGGTGTCTAACAGTGTGGAACGTTCTAGTATGTGAAGTATAGACTGGTACGTACTGTGAAGAGCACAAAGAACTTCTGGTTGTTCTCTCCCACACAGTTGTTAACCCAGGGACAGTGGTGGTCCATCTTCCTTATGCAGCGCTTACACACActagtatggagagagagaactaatTATACACACTAGACAGTGTCAGTCAGGGTTACTCTACCTGCAGTGTTGTCTGTTCTCTGGGACAGTGTCAATCAGGGTTATTCTACCTGTAGTGTTCTCTGGGACAGTGTCAGTCAGGGTTACTCTACCTGCagtgtcctctgttctctggGACAGTGTCAGTCAGGGTTACTCTACCTGCAGTGTTCTCTGTTCTCTGGGACAGTGTCAGTCAGGGTTACTCTACCTGCAGTGTTAACTGGGACAGTGTCAA
>TU118346
ACGTAGTTACACAAACTCTAAGTCATTTTCAGGGCATTTGACAACTTAAAAACATCTTAATTCCTAACTTTCCAATAGGTAGTGTGTGTTGGCTACTGGTCTGTGTTATTGCAGCAGGCTGAAGGTGTCTAACAGTGTGGAACGTTCTAGTATGTGAAGTATAGACTGGTACGTACTGTGAAGAGCACAAAGAACTTCTGGTTGTTCTCTCCCACACAGTTGTTAACCCAGGGACAGTGGTGGTCCATCTTCCTTATGCAGCGCTTACACACActagtatggagagagagaactaatTATACACACTAGACAGTGTCAGTCAGGGTTACTCTACCTGCAGTGTTGTCTGTTCTCTGGGACAGTGTCAATCAGGGTTATTCTACCTGTAGTGTTCTCTGGGACAGTGTCAGTCAGGGTTACTCTACCTGCAGtgttctctggGACAGTGTCAGTCAGGGTTACTCTACCTGCAGTGTTCTCTGTTCTCTGGGACAGTGTCAGTCAGGGTTACTCTACCTGCAGTGTTAACTGGGACAGTGTCAA
>TU118347
ACGTAGTTACACAAACTCTAAGTCATTTTCAGGGCATTTGACAACTTAAAAACATCTTAATTCCTAACTTTCCAATAGGTAGTGTGTGTTGGCTACTGGTCTGTGTTATTGCAGCAGGCTGAAGGTGTCTAACAGTGTGGAACGTTCTAGTATGTGAAGTATAGACTGGTACGTACTGTGAAGAGCACAAAGAACTTCTGGTTGTTCTCTCCCACACAGTTGTTAACCCAGGGACAGTGGTGGTCCATCTTCCTTATGCAGCGCTTACACACActagtatggagagagagaactaatTATACACACTAGACAGTGTCAGTCAGGGTTACTCTACCTGCAGTGTTGTCTGTTCTCTGGGACAGTGTCAATCAGGGTTATTCTACCTGTAGTGTTCTCTGGGACAGTGTCAGTCAGGGTTACTCTACCTGCAGTGTTGTCTGTTCTCTGGGACAGTGTCAGTCAGGGTTACTCTACCTGCAGTGTTCTCTGGGACAGTGTCAGTCAGGGTTACTCTACCTGCAGTGTTAACTGGGACAGTGTCAA

Function

NR:

description
PREDICTED: palmitoyltransferase ZDHHC7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118345 False 550 lncRNA 0.45 2 1721995 1722691
TU118346 False 543 lncRNA 0.45 2 1721995 1722691
TU118347 True 543 lncRNA 0.45 2 1721995 1722691

Neighbor

gene id symbol gene type direction distance location
tmem42a LOC106595323 coding upstream 14320 1704889 ~ 1707675 (+)
gpd1l LOC105023484 coding upstream 23626 1683561 ~ 1698369 (+)
LOC118937325 NA coding upstream 115222 1605140 ~ 1606773 (+)
LOC118937328 NA coding upstream 132627 1588820 ~ 1589368 (+)
LOC118937327 NA coding upstream 133345 1585657 ~ 1588650 (+)
LOC110514512 LOC105016610 coding downstream 22607 1745298 ~ 1794938 (+)
slc6a3 slc6a3 coding downstream 94117 1816808 ~ 1853570 (+)
LOC110511503 LOC106605726 coding downstream 142674 1865365 ~ 1901456 (+)
LOC110516539 NA coding downstream 393862 2116553 ~ 2120455 (+)
LOC118944029 NA coding downstream 443430 2166121 ~ 2177996 (+)
G105030 k1143 non-coding upstream 17149 1702955 ~ 1704846 (+)
G105083 NA non-coding upstream 25570 1695943 ~ 1696425 (+)
G105078 NA non-coding upstream 42508 1679058 ~ 1679487 (+)
G105074 NA non-coding upstream 48202 1673026 ~ 1673793 (+)
G105069 NA non-coding upstream 55486 1666029 ~ 1666509 (+)
G105107 NA non-coding downstream 33690 1756381 ~ 1757197 (+)
G105111 NA non-coding downstream 44118 1766809 ~ 1771032 (+)
G105043 NA non-coding downstream 75807 1798498 ~ 1799324 (+)
G105039 NA non-coding downstream 76982 1799673 ~ 1799993 (+)
G105041 NA non-coding downstream 83005 1805696 ~ 1806063 (+)
G105042 NA other upstream 11438 1708969 ~ 1710557 (+)
G105036 NA other upstream 21564 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 369132 1309202 ~ 1390936 (+)
G104761 NA other upstream 568246 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 849480 860459 ~ 872515 (+)
G106019 NA other downstream 798025 2520716 ~ 2527972 (+)
G106122 NA other downstream 995270 2717961 ~ 2718525 (+)
G106240 NA other downstream 1252132 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 1484106 3006312 ~ 3391033 (+)
mboat1 LOC106573215 other downstream 1644514 3350582 ~ 3487129 (+)

Expression


Co-expression Network