Gene
RNA
| Item | Value |
|---|---|
| gene id | G105091 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 1721995 ~ 1722691 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: palmitoyltransferase ZDHHC7-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU118345 | False | 550 | lncRNA | 0.45 | 2 | 1721995 | 1722691 |
| TU118346 | False | 543 | lncRNA | 0.45 | 2 | 1721995 | 1722691 |
| TU118347 | True | 543 | lncRNA | 0.45 | 2 | 1721995 | 1722691 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| tmem42a | LOC106595323 | coding | upstream | 14320 | 1704889 ~ 1707675 (+) |
| gpd1l | LOC105023484 | coding | upstream | 23626 | 1683561 ~ 1698369 (+) |
| LOC118937325 | NA | coding | upstream | 115222 | 1605140 ~ 1606773 (+) |
| LOC118937328 | NA | coding | upstream | 132627 | 1588820 ~ 1589368 (+) |
| LOC118937327 | NA | coding | upstream | 133345 | 1585657 ~ 1588650 (+) |
| LOC110514512 | LOC105016610 | coding | downstream | 22607 | 1745298 ~ 1794938 (+) |
| slc6a3 | slc6a3 | coding | downstream | 94117 | 1816808 ~ 1853570 (+) |
| LOC110511503 | LOC106605726 | coding | downstream | 142674 | 1865365 ~ 1901456 (+) |
| LOC110516539 | NA | coding | downstream | 393862 | 2116553 ~ 2120455 (+) |
| LOC118944029 | NA | coding | downstream | 443430 | 2166121 ~ 2177996 (+) |
| G105030 | k1143 | non-coding | upstream | 17149 | 1702955 ~ 1704846 (+) |
| G105083 | NA | non-coding | upstream | 25570 | 1695943 ~ 1696425 (+) |
| G105078 | NA | non-coding | upstream | 42508 | 1679058 ~ 1679487 (+) |
| G105074 | NA | non-coding | upstream | 48202 | 1673026 ~ 1673793 (+) |
| G105069 | NA | non-coding | upstream | 55486 | 1666029 ~ 1666509 (+) |
| G105107 | NA | non-coding | downstream | 33690 | 1756381 ~ 1757197 (+) |
| G105111 | NA | non-coding | downstream | 44118 | 1766809 ~ 1771032 (+) |
| G105043 | NA | non-coding | downstream | 75807 | 1798498 ~ 1799324 (+) |
| G105039 | NA | non-coding | downstream | 76982 | 1799673 ~ 1799993 (+) |
| G105041 | NA | non-coding | downstream | 83005 | 1805696 ~ 1806063 (+) |
| G105042 | NA | other | upstream | 11438 | 1708969 ~ 1710557 (+) |
| G105036 | NA | other | upstream | 21564 | 1699073 ~ 1700431 (+) |
| tgfbr2b | LOC106606173 | other | upstream | 369132 | 1309202 ~ 1390936 (+) |
| G104761 | NA | other | upstream | 568246 | 1153061 ~ 1153749 (+) |
| cmc1 | cc068 | other | upstream | 849480 | 860459 ~ 872515 (+) |
| G106019 | NA | other | downstream | 798025 | 2520716 ~ 2527972 (+) |
| G106122 | NA | other | downstream | 995270 | 2717961 ~ 2718525 (+) |
| G106240 | NA | other | downstream | 1252132 | 2974823 ~ 3039475 (+) |
| G106253 | cdkal | other | downstream | 1484106 | 3006312 ~ 3391033 (+) |
| mboat1 | LOC106573215 | other | downstream | 1644514 | 3350582 ~ 3487129 (+) |
