G105043



Basic Information


Item Value
gene id G105043
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1798498 ~ 1799324 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU118284
tctctcctccctggccattagagactgacccatggttcctctctcctccctggccattagagactgacccatggttcctctctcctccgtggccattagagactgacccatggttcctctctcctccctggccATTAGAGACTGACCCATGGTTCCTCTCTCCTCCGTGGCCATTAGAGACTGACCCATGGTTCCTCTCTCCTCCGTGGAACATTAGAGACTGACCCATGGTTCCTCTCTCCTCCGTGGCCATTAGAGACTGACCCATGGTTCCTTTCTGGACACATCTGTTTTCATCTTCACACAACCCTCACAGCTCTATTTTTCCAGTGAGATATACAGAGCTATTTTTCAATGTCAAAATGTACTAATATACTGTTACGGACCAAAAACGTTGTTAGTTAGTGTGCGGTTAACTGGTAGTAGTAGTGCTCAGAATAGAGCCAGCTGTGTATAAGGCTTTAAGGGAAAACAGAATAGAACCAGCAGTGTATAAGGCTTTAAGGGAAGACAGAATAGAACCAGCTGTGTATAAGGCTTTAAGGGAAGACAGAATAGAACCAGCTGTGTATAAGGCTTTAAGGGAAGACAGAATAGAACCAGCAGTGTATAAGGCTTTAAGTGAAAACAGAATAGAACCAGCTGTGTATAAGGCTTTAAGGGAATACAGAATAGAACCAGCTGTGTATAAGGCTTTAAGGGAATACAGAATAGAACCAGCAGTGTATAAGGCTTTAAGGGAATACAGAATAGAACCAGCTGTGTATAAGGCTTTAAGGGAAGACAGAATAGAACCAGCTGTGTATAAGGCTTTAAGGGAAGACAGA

Function


NR:

description
uncharacterized protein LOC110502537

GO: NA

KEGG:

id description

RNA


RNA id representative length rna type GC content exon number start site end site
TU118284 True 827 lncRNA 0.45 1 1798498 1799324

Neighbor


gene id symbol gene type direction distance location
LOC110514512 LOC105016610 coding upstream 3560 1745298 ~ 1794938 (+)
tmem42a LOC106595323 coding upstream 90823 1704889 ~ 1707675 (+)
gpd1l LOC105023484 coding upstream 100129 1683561 ~ 1698369 (+)
LOC118937325 NA coding upstream 191725 1605140 ~ 1606773 (+)
LOC118937328 NA coding upstream 209130 1588820 ~ 1589368 (+)
slc6a3 slc6a3 coding downstream 17484 1816808 ~ 1853570 (+)
LOC110511503 LOC106605726 coding downstream 66041 1865365 ~ 1901456 (+)
LOC110516539 NA coding downstream 317229 2116553 ~ 2120455 (+)
LOC118944029 NA coding downstream 366797 2166121 ~ 2177996 (+)
LOC118944030 NA coding downstream 618862 2418186 ~ 2420621 (+)
G105111 NA non-coding upstream 27466 1766809 ~ 1771032 (+)
G105107 NA non-coding upstream 41301 1756381 ~ 1757197 (+)
G105091 NA non-coding upstream 75807 1721995 ~ 1722691 (+)
G105030 k1143 non-coding upstream 93652 1702955 ~ 1704846 (+)
G105083 NA non-coding upstream 102073 1695943 ~ 1696425 (+)
G105039 NA non-coding downstream 349 1799673 ~ 1799993 (+)
G105041 NA non-coding downstream 6372 1805696 ~ 1806063 (+)
G105033 NA non-coding downstream 7579 1806903 ~ 1807667 (+)
G105115 NA non-coding downstream 10752 1810076 ~ 1810305 (+)
G105116 NA non-coding downstream 12257 1811581 ~ 1811808 (+)
G105042 NA other upstream 87941 1708969 ~ 1710557 (+)
G105036 NA other upstream 98067 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 445635 1309202 ~ 1390936 (+)
G104761 NA other upstream 644749 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 925983 860459 ~ 872515 (+)
G106019 NA other downstream 721392 2520716 ~ 2527972 (+)
G106122 NA other downstream 918637 2717961 ~ 2718525 (+)
G106240 NA other downstream 1175499 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 1407473 3006312 ~ 3391033 (+)
mboat1 LOC106573215 other downstream 1567881 3350582 ~ 3487129 (+)

Expression



Co-expression Network