XLOC_020782 (s1pr4)


Basic Information

Item Value
gene id XLOC_020782
gene name s1pr4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5320415 ~ 5323482 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040977
GCTTTCTGCACCAGAGCATGGCTCAATACCAAAAACCACAGCATCACTAATAAAGAGGTTATCCCAAGAGGGAAAGGATATTCAGGACTCATCCCTAAGGACTCGGAGTCTGATTGCCTGGAGTCCAATTGTGTCAAATCTCTGAATTGACCCCAGCGAGATTCAACTCCACATTTACACCATGGAAGTCCTGCGTTCCTTCAGCTCCGCCTCATCCTGTCCCGACGTCTACAACTGGACCAGCAACAGCCTCATCCTGGAGCACTACAACTACACGGGACGCCTCCACCACCGCAAGCCCTCAAAGAAAAGCGTGAGCGCTGTCACCGTCCTGTTCCTGTGCTTCAGCGTCTTCATCATCCTGGAGAACCTCATGGTGCTCCTAGCCGTGCTGTTTCGGGTGCGTCTGCGCCACCGTTGGATATTCATCTGCATTGCCAACATTGCACTGAGTGACTTGTTGACGGGAACATCATACGTGGTCAACATCTGCATGTCCGGCGAACAAACCTTCAGGCTAACCCCAATTCTCTGGCTATTCCGAGAAGGACTTTTATTTGTAGCTTTAGCGGCATCCATCTTTAGCCTTCTCTTGATCGCTGTAGAGCGATATGCGACTATGATGAAACCCGTCCACCAGAAAACCGCAACAAAGACCTACCGAGTCTACATCATGATGCTGTTATGCTGGATAACGGCGTTTATAATCGGATTCCTTCCACTTATGGGCTGGAACTGCGTTTGCGATCTGAGAAGTTGCTCGACACTTCTTCCGCTCTACTCCAAGAGCTACATCTTGTTCGCATTGGTCATCTTCTTCATAATTTTGCTCACAATCGGCGTACTCTATTTTGCAATCTATTGCCATGTACGAAGTAGCACTGAAACGATATCCGCACGCAGTCGCAAGCGTTCGCTACGCCTCCTGAAAGCCGTCATTTCAATTGTTGGGGTCTTCATGGTATGTTGGGGTCCACTGTTCATCCTCTTATTAGTGGATTTCTTTTGTTACTCTCGAAGTTGCAGCCCTCTTTTCAATCCCGAATGGGTCATTGCGCTAGCCGTACTCAACTCTGCCATGAATccgctcatttattcattcggcAGTCTGGAGCTTCGCAAAGCCATCGCGACGCTACTGTGCTGCAGTTGTCTGAAGGCAGGATTGTGCGATCCCAAAACCTTCATGTCCAAGGAGACCTCCAGCACCTCAGGGAGTCGACACAGCAGCTTGCGCAACAGCTTCAGCAAGGTGCGAAACCTGAGCACGAGTCCTCCGCCCGAACCGAAGAACGGCAAAAAAACACGCCTCAGCTCCACCACTTCTTGTTTATCTGCGTCAAGCGGTTAGCAGGGAGTTTCACCTTCGCCACAGAAACTGCACCTCCTCTAACAAACATTGTGGTGTTGTAGATTGTAGATGCTGATGATGGACAAATCGTGCAGAAAGGACTATAAAAGTGAGCAGCCATGcaagaataaatataaaaaagacaaaaaaaaaaagataataacgTAACTTGAATGCATTTCTGTACATTTGCGTTGAACGCAAAGCAATCAGAACTGTAACCTACTCAAAGAGAAACTGCCTTTCATTGTTTTCTACAAGACTGTAAAAGTAATATGTGTaacttaaaagatttaaaaaagtatattttcatATTCTATTAAAAGGgaaatgtttgttttgtacatGAAACTGTTTTAAAGATTTTGTAAGCGGATGCACTGTTGAAATGTTGGCAAGAAATaaaatgcattgatttttt

Function

symbol description
s1pr4 Predicted to enable G protein-coupled receptor activity. Acts upstream of or within neutrophil chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in brain; eye; heart; intestine; and kidney. Orthologous to human S1PR4 (sphingosine-1-phosphate receptor 4).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0030593 neutrophil chemotaxis biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0038036 sphingosine-1-phosphate receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04068 FoxO signaling pathway
ko04071 Sphingolipid signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-050506-8 Predicted to enable G protein-coupled receptor activity. Acts upstream of or within neutrophil chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in brain; eye; heart; intestine; and kidney. Orthologous to human S1PR4 (sphingosine-1-phosphate receptor 4).

Ensembl:

ensembl_id ENSDARG00000074851

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040977 True 1772 mRNA 0.46 2 5320415 5323482

Neighbor

gene id symbol gene type direction distance location
XLOC_020781 NA coding downstream 4826 5312971 ~ 5315589 (-)
XLOC_020780 NA coding downstream 45453 5267523 ~ 5274962 (-)
XLOC_020779 ncln coding downstream 68403 5233396 ~ 5252012 (-)
XLOC_020778 tnfaip8l1 coding downstream 148586 5153461 ~ 5171829 (-)
XLOC_020776 CR936300.2 coding downstream 157282 5123914 ~ 5163133 (-)
XLOC_020783 zgc:194627 coding upstream 109611 5433093 ~ 5441893 (-)
XLOC_020784 NA coding upstream 129761 5453243 ~ 5463115 (-)
XLOC_020785 CABZ01064972.1 coding upstream 160106 5483588 ~ 5518117 (-)
XLOC_020786 CABZ01064968.1 coding upstream 194832 5518314 ~ 5529241 (-)
XLOC_020787 zgc:171601 coding upstream 226252 5549734 ~ 5553007 (-)
XLOC_020777 CR936300.1 non-coding downstream 175393 5140530 ~ 5145022 (-)
XLOC_020765 NA non-coding downstream 466600 4853062 ~ 4853815 (-)
XLOC_020756 NA non-coding downstream 585078 4733007 ~ 4735337 (-)
XLOC_020788 NA non-coding upstream 300891 5624373 ~ 5631081 (-)
XLOC_020792 NA non-coding upstream 377778 5701260 ~ 5724131 (-)
XLOC_020793 NA non-coding upstream 399846 5723328 ~ 5825199 (-)
XLOC_020795 BX005329.2 non-coding upstream 421821 5745303 ~ 5749450 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_10860938_10862107 S1PR4 coding CI01000030 null 10860768 ~ 10862292 (+)