G105033


Basic Information

Item Value
gene id G105033
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1806903 ~ 1807667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU118267
TTTTTTTTTCGTTTGGATTATTTAGGTAGCTGTGAAATTAAGACTCTCTGACTAAAAAGGTTGTTGTTGCAAAACAAAAGTTGGTCCACCTAGTTCTCGTACTATTCATTCATTTAATCATGTTGTCTGTCTATTGTTTTAAATATCTCACAACATACAAGAATCATTCTGTTTCTATCGGTTTTTTAAAAATGGTTCTGAAGACAAACCGTAAGAGCTGATATCTTATttatgctactactactgctgcctgCTTCTTCTGTGTCCCACACTGAACTGAAGACGAAACATCTACCTGTGTAATGTGTGTTCCTCTAGACtgatacctagctagctagctggctttcTGATGGTTCCTCTAGactgatagctagctagctagctttctgaTGGTTCCTCTAGACtgatacctagctagctagctttctgaTGGTTCCTCTAGACtgatacctagctagctagctttctgaTGGTTCCTCTAGACTGATACCTAGCATGCTAGCTTTCTGATGGTTTTGCTGTGTGGACCAGGATCGTGCTGAATTTGCTGTTCTTTCTCTCTACATTTTTCTATTTTCTCCTCTTGAGTTTTTATTTGTAATGCACTTAAACAGTCATTTACTGCAAGATACTGTGAAATGTATTTTTGGGGACGCTATGATGATATAACTTATCAATGTGACTCTttgatataaaaaataaatacaacatttaaCACCAA
>TU118268
TTTTTTTTTCGTTTGGATTATTTAGGTAGCTGTGAAATTAAGACTCTCTGACTAAAAAGGTTGTTGTTGCAAAACAAAAGTTGGTCCACCTAGTTCTCGTACTATTCATTCATTTAATCATGTTGTCTGTCTATTGTTTTAAATATCTCACAACATACAAGAATCATTCTGTTTCTATCGGTTTTTTAAAAATGGTTCTGAAGACAAACCGTAAGAGCTGATATCTTATttatgctactactactgctgcctgCTTCTTCTGTGTCCCACACTGAACTGAAGACGAAACATCTACCTGTGTAATGTGTGTTCCTCTAGACtgatacctagctagctagctggctttcTGATGGTTCCTCTAGACtgatacctagctagctagctggctttcTGATGGTTCCTCTAGactgatagctagctagctagctttctgaTGGTTCCTCTAGACtgatacctagctagctagctttctgaTGGTTCCTCTAGACTGATACCTAGCATGCTAGCTTTCTGATGGTTTTGCTGTGTGGACCAGGATCGTGCTGAATTTGCTGTTCTTTCTCTCTACATTTTTCTATTTTCTCCTCTTGAGTTTTTATTTGTAATGCACTTAAACAGTCATTTACTGCAAGATACTGTGAAATGTATTTTTGGGGACGCTATGATGATATAACTTATCAATGTGACTCTttgatataaaaaataaatacaacatttaaCACCAA
>TU118270
TTTTTTTTTCGTTTGGATTATTTAGGTAGCTGTGAAATTAAGACTCTCTGACTAAAAAGGTTGTTGTTGCAAAACAAAAGTTGGTCCACCTAGTTCTCGTACTATTCATTCATTTAATCATGTTGTCTGTCTATTGTTTTAAATATCTCACAACATACAAGAATCATTCTGTTTCTATCGGTTTTTTAAAAATGGTTCTGAAGACAAACCGTAAGAGCTGATATCTTATttatgctactactactgctgcctgCTTCTTCTGTGTCCCACACTGAACTGAAGACGAAACATCTACCTGTGTAATGTGTGTTCCTCTAGACtgatacctagctagctagctggctttcTGATGGTTCCTCTAGACtgatacCTAGCATGCTAGCTTTCTGATGGTTTTGCTGTGTGGACCAGGATCGTGCTGAATTTGCTGTTCTTTCTCTCTACATTTTTCTATTTTCTCCTCTTGAGTTTTTATTTGTAATGCACTTAAACAGTCATTTACTGCAAGATACTGTGAAATGTATTTTTGGGGACGCTATGATGATATAACTTATCAATGTGACTCTttgatataaaaaataaatacaacatttaaCACCAA
>TU118271
TTTTTTTTTCGTTTGGATTATTTAGGTAGCTGTGAAATTAAGACTCTCTGACTAAAAAGGTTGTTGTTGCAAAACAAAAGTTGGTCCACCTAGTTCTCGTACTATTCATTCATTTAATCATGTTGTCTGTCTATTGTTTTAAATATCTCACAACATACAAGAATCATTCTGTTTCTATCGGTTTTTTAAAAATGGTTCTGAAGACAAACCGTAAGAGCTGATATCTTATttatgctactactactgctgcctgCTTCTTCTGTGTCCCACACTGAACTGAAGACGAAACATCTACCTGTGTAATGTGTGTTCCTCTAGACtgatacctagctagctagctggctttcTGATGGTTCCTCTAGACtgatacctagctagctagctttctgaTGGTTCCTCTAGACtgatacctagctagctagctttctgaTGGTTCCTCTAGACTGATACCTAGCATGCTAGCTTTCTGATGGTTTTGCTGTGTGGACCAGGATCGTGCTGAATTTGCTGTTCTTTCTCTCTACATTTTTCTATTTTCTCCTCTTGAGTTTTTATTTGTAATGCACTTAAACAGTCATTTACTGCAAGATACTGTGAAATGTATTTTTGGGGACGCTATGATGATATAACTTATCAATGTGACTCTttgatataaaaaataaatacaacatttaaCACCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118267 False 721 lncRNA 0.40 2 1806903 1807667
TU118268 False 725 lncRNA 0.44 2 1806903 1807667
TU118270 False 601 lncRNA 0.42 2 1806903 1807667
TU118271 True 681 lncRNA 0.36 2 1806903 1807667

Neighbor

gene id symbol gene type direction distance location
LOC110514512 LOC105016610 coding upstream 11965 1745298 ~ 1794938 (+)
tmem42a LOC106595323 coding upstream 99228 1704889 ~ 1707675 (+)
gpd1l LOC105023484 coding upstream 108534 1683561 ~ 1698369 (+)
LOC118937325 NA coding upstream 200130 1605140 ~ 1606773 (+)
LOC118937328 NA coding upstream 217535 1588820 ~ 1589368 (+)
slc6a3 slc6a3 coding downstream 9141 1816808 ~ 1853570 (+)
LOC110511503 LOC106605726 coding downstream 57698 1865365 ~ 1901456 (+)
LOC110516539 NA coding downstream 308886 2116553 ~ 2120455 (+)
LOC118944029 NA coding downstream 358454 2166121 ~ 2177996 (+)
LOC118944030 NA coding downstream 610519 2418186 ~ 2420621 (+)
G105041 NA non-coding upstream 840 1805696 ~ 1806063 (+)
G105039 NA non-coding upstream 6910 1799673 ~ 1799993 (+)
G105043 NA non-coding upstream 7579 1798498 ~ 1799324 (+)
G105111 NA non-coding upstream 35871 1766809 ~ 1771032 (+)
G105107 NA non-coding upstream 49706 1756381 ~ 1757197 (+)
G105115 NA non-coding downstream 2409 1810076 ~ 1810305 (+)
G105116 NA non-coding downstream 3914 1811581 ~ 1811808 (+)
G105130 NA non-coding downstream 26947 1834614 ~ 1835116 (+)
G105122 NA non-coding downstream 46350 1854017 ~ 1854230 (+)
G105119 NA non-coding downstream 46642 1854309 ~ 1854718 (+)
G105042 NA other upstream 96346 1708969 ~ 1710557 (+)
G105036 NA other upstream 106472 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 454040 1309202 ~ 1390936 (+)
G104761 NA other upstream 653154 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 934388 860459 ~ 872515 (+)
G106019 NA other downstream 713049 2520716 ~ 2527972 (+)
G106122 NA other downstream 910294 2717961 ~ 2718525 (+)
G106240 NA other downstream 1167156 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 1399130 3006312 ~ 3391033 (+)
mboat1 LOC106573215 other downstream 1559538 3350582 ~ 3487129 (+)

Expression


Co-expression Network