G105116


Basic Information

Item Value
gene id G105116
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1811581 ~ 1811808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU118381
atctacagtagtaTCTACATCTTCAGTCCAGGCAGTAAACATATCCTGCAGTACTGACTTTAACTGCATGGCATAGATTTTACTTGAAGAATTGACAAACCCTAGATACTTcattgaggatttttttttgtgaaagaCCAATGGCTTGTTAAAATGTCTCATTTAATTTCTCAGCCAAGTCTTTTTTCATGTATATGTTTCTGTAGAGAAACAAGGTCAGGAGCAGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118381 True 228 lncRNA 0.37 1 1811581 1811808

Neighbor

gene id symbol gene type direction distance location
LOC110514512 LOC105016610 coding upstream 16643 1745298 ~ 1794938 (+)
tmem42a LOC106595323 coding upstream 103906 1704889 ~ 1707675 (+)
gpd1l LOC105023484 coding upstream 113212 1683561 ~ 1698369 (+)
LOC118937325 NA coding upstream 204808 1605140 ~ 1606773 (+)
LOC118937328 NA coding upstream 222213 1588820 ~ 1589368 (+)
slc6a3 slc6a3 coding downstream 5000 1816808 ~ 1853570 (+)
LOC110511503 LOC106605726 coding downstream 53557 1865365 ~ 1901456 (+)
LOC110516539 NA coding downstream 304745 2116553 ~ 2120455 (+)
LOC118944029 NA coding downstream 354313 2166121 ~ 2177996 (+)
LOC118944030 NA coding downstream 606378 2418186 ~ 2420621 (+)
G105115 NA non-coding upstream 1276 1810076 ~ 1810305 (+)
G105033 NA non-coding upstream 3914 1806903 ~ 1807667 (+)
G105041 NA non-coding upstream 5518 1805696 ~ 1806063 (+)
G105039 NA non-coding upstream 11588 1799673 ~ 1799993 (+)
G105043 NA non-coding upstream 12257 1798498 ~ 1799324 (+)
G105130 NA non-coding downstream 22806 1834614 ~ 1835116 (+)
G105122 NA non-coding downstream 42209 1854017 ~ 1854230 (+)
G105119 NA non-coding downstream 42501 1854309 ~ 1854718 (+)
G105121 NA non-coding downstream 43352 1855160 ~ 1855480 (+)
G105120 NA non-coding downstream 43776 1855584 ~ 1857117 (+)
G105042 NA other upstream 101024 1708969 ~ 1710557 (+)
G105036 NA other upstream 111150 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 458718 1309202 ~ 1390936 (+)
G104761 NA other upstream 657832 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 939066 860459 ~ 872515 (+)
G106019 NA other downstream 708908 2520716 ~ 2527972 (+)
G106122 NA other downstream 906153 2717961 ~ 2718525 (+)
G106240 NA other downstream 1163015 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 1394989 3006312 ~ 3391033 (+)
mboat1 LOC106573215 other downstream 1555397 3350582 ~ 3487129 (+)

Expression


Co-expression Network