G105152


Basic Information

Item Value
gene id G105152
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1891466 ~ 1891948 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU118458
CATGTGCTGGTGCTACCATGTGCTGGAGCTACCATGTTCTGGAGCCCTGATTTTAAGATTTTAAGGAAAACcaggtgtttacatgtcctaacaATTGGAAAggttgctcagaaaaccaggtgtttacATCCTAACAATTGAAAAGGtggctcagaaaaccaggtgtttacATCCTAACAATTGGAAAggttgctcagaaaaccaggtgttttaaacAGTGTATGTTTACTTCTGATTTTGACCTGACACCGATTTAAGATAAGCGGAGGAAGGAGTTTAAAAAAGCTTGACAATTGTcccggcgtcgtccgggttaagggagggtttgggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118458 True 331 lncRNA 0.43 3 1891466 1891948

Neighbor

gene id symbol gene type direction distance location
slc6a3 slc6a3 coding upstream 37896 1816808 ~ 1853570 (+)
LOC110514512 LOC105016610 coding upstream 96528 1745298 ~ 1794938 (+)
tmem42a LOC106595323 coding upstream 183791 1704889 ~ 1707675 (+)
gpd1l LOC105023484 coding upstream 193097 1683561 ~ 1698369 (+)
LOC118937325 NA coding upstream 284693 1605140 ~ 1606773 (+)
LOC110516539 NA coding downstream 224605 2116553 ~ 2120455 (+)
LOC118944029 NA coding downstream 274173 2166121 ~ 2177996 (+)
LOC118944030 NA coding downstream 526238 2418186 ~ 2420621 (+)
LOC118937340 NA coding downstream 1086288 2978236 ~ 2978524 (+)
LOC118937337 NA coding downstream 1086838 2978786 ~ 2980193 (+)
G105151 NA non-coding upstream 1179 1889923 ~ 1890287 (+)
G105148 NA non-coding upstream 6192 1884835 ~ 1885274 (+)
G105136 NA non-coding upstream 29732 1861236 ~ 1861734 (+)
G105120 NA non-coding upstream 34349 1855584 ~ 1857117 (+)
G105121 NA non-coding upstream 35986 1855160 ~ 1855480 (+)
LOC110511503 LOC106605726 non-coding downstream 8750 1865365 ~ 1901456 (+)
G105158 NA non-coding downstream 10364 1902312 ~ 1903179 (+)
G105159 NA non-coding downstream 11483 1903431 ~ 1903890 (+)
G105162 NA non-coding downstream 14548 1906496 ~ 1906960 (+)
G105123 NA non-coding downstream 20516 1912464 ~ 1917170 (+)
G105042 NA other upstream 180909 1708969 ~ 1710557 (+)
G105036 NA other upstream 191035 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 538603 1309202 ~ 1390936 (+)
G104761 NA other upstream 737717 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 1018951 860459 ~ 872515 (+)
G106019 NA other downstream 628768 2520716 ~ 2527972 (+)
G106122 NA other downstream 826013 2717961 ~ 2718525 (+)
G106240 NA other downstream 1082875 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 1314849 3006312 ~ 3391033 (+)
mboat1 LOC106573215 other downstream 1475257 3350582 ~ 3487129 (+)

Expression


Co-expression Network