G105162


Basic Information

Item Value
gene id G105162
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1906496 ~ 1906960 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU118470
gtatatacagttgaagtcggaagtttacatacacttaggttggagttattaaaattagtttttcaaccactccacaaatttcttgttaattaacaaactatagttttggaaagttggttaagacatctactttgtgcgtcatttttccaataattgtttacagacagattcattcactgtatcacaattccagtgggtcagaagtttacatacactaacttgacagtgcctttaaacagcttggaaaattacagaaaatgatgtcatggctttagaagcttctgataggctaattgacatcatttgagtcaattggaggtgtacctgtggatgtatgtcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaactcaGCCCCGACTTCAGACAATTTTtataaacctccacaagtctgattcatccttgggagcaatttcc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118470 True 465 lncRNA 0.45 1 1906496 1906960

Neighbor

gene id symbol gene type direction distance location
LOC110511503 LOC106605726 coding upstream 5048 1865365 ~ 1901456 (+)
slc6a3 slc6a3 coding upstream 52926 1816808 ~ 1853570 (+)
LOC110514512 LOC105016610 coding upstream 111558 1745298 ~ 1794938 (+)
tmem42a LOC106595323 coding upstream 198821 1704889 ~ 1707675 (+)
gpd1l LOC105023484 coding upstream 208127 1683561 ~ 1698369 (+)
LOC110516539 NA coding downstream 209593 2116553 ~ 2120455 (+)
LOC118944029 NA coding downstream 259161 2166121 ~ 2177996 (+)
LOC118944030 NA coding downstream 511226 2418186 ~ 2420621 (+)
LOC118937340 NA coding downstream 1071276 2978236 ~ 2978524 (+)
LOC118937337 NA coding downstream 1071826 2978786 ~ 2980193 (+)
G105159 NA non-coding upstream 2606 1903431 ~ 1903890 (+)
G105158 NA non-coding upstream 3317 1902312 ~ 1903179 (+)
G105152 NA non-coding upstream 14548 1891466 ~ 1891948 (+)
G105151 NA non-coding upstream 16209 1889923 ~ 1890287 (+)
G105123 NA non-coding downstream 5504 1912464 ~ 1917170 (+)
G105124 NA non-coding downstream 10389 1917349 ~ 1918041 (+)
G105125 nrsn1 non-coding downstream 11122 1918082 ~ 1922686 (+)
G105176 NA non-coding downstream 33226 1940186 ~ 1940573 (+)
G105177 NA non-coding downstream 35102 1942062 ~ 1942281 (+)
G105042 NA other upstream 195939 1708969 ~ 1710557 (+)
G105036 NA other upstream 206065 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 553633 1309202 ~ 1390936 (+)
G104761 NA other upstream 752747 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 1033981 860459 ~ 872515 (+)
G106019 NA other downstream 613756 2520716 ~ 2527972 (+)
G106122 NA other downstream 811001 2717961 ~ 2718525 (+)
G106240 NA other downstream 1067863 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 1299837 3006312 ~ 3391033 (+)
mboat1 LOC106573215 other downstream 1460245 3350582 ~ 3487129 (+)

Expression


Co-expression Network