G105472



Basic Information


Item Value
gene id G105472
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1927211 ~ 1928316 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU118976
ATGGACGTCGTTCAGTGAACCATGAGTGATGAGAAACATAAACATTGTCTGAGACCTGAAGATTTGTGTTAGCAATGCAAGCCAACACCAAGGCTTCAGGTCTTCAGGTTAATGCTTTAGGTCTTCAGGTTATCACAGTCAGGGTAATGCTTTAGGTCTTCAGGTTATCACAGTCAGGATAATGCTTTAGGTATTCAGGTTATCCCAGTCAGGATAATGCTTTAGGTATTCAGGTTATCCCAGTCAGGATAATGCTTTAGGTATTCAGGTTATCCCAGTCAGGATAATGCTTTAGGTCTTCAGGTTA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU118976 True 307 lncRNA 0.40 3 1927211 1928316

Neighbor


gene id symbol gene type direction distance location
nrsn1 nrsn1 coding downstream 1272 1921010 ~ 1925939 (-)
zdhhc3a zdhhc3 coding downstream 194878 1709516 ~ 1732333 (-)
kiaa1143 k1143 coding downstream 222348 1702951 ~ 1704863 (-)
LOC110515405 LOC106590999 coding downstream 243722 1573402 ~ 1683489 (-)
LOC110515934 gadl1 coding downstream 470078 1427251 ~ 1457133 (-)
LOC118937333 NA coding upstream 374320 2302636 ~ 2303881 (-)
LOC118937335 NA coding upstream 501959 2273420 ~ 2440302 (-)
sox4b sox4 coding upstream 518058 2446374 ~ 2449761 (-)
LOC110512766 LOC106593784 coding upstream 585394 2513710 ~ 2516419 (-)
LOC110514306 NA coding upstream 589871 2518187 ~ 2519022 (-)
G105427 NA non-coding downstream 10023 1912592 ~ 1917188 (-)
G105470 NA non-coding downstream 15125 1911627 ~ 1912086 (-)
G105456 NA non-coding downstream 46927 1879583 ~ 1880284 (-)
G105455 NA non-coding downstream 50024 1876079 ~ 1877187 (-)
G105447 NA non-coding downstream 62425 1864321 ~ 1864786 (-)
G105473 NA non-coding upstream 2955 1931271 ~ 1932179 (-)
G105478 NA non-coding upstream 8330 1936646 ~ 1937308 (-)
G105489 NA non-coding upstream 24096 1952412 ~ 1952888 (-)
G105495 NA non-coding upstream 35204 1963520 ~ 1963850 (-)
G105499 NA non-coding upstream 39188 1967504 ~ 1969307 (-)
G105428 NA other downstream 9184 1917351 ~ 1918027 (-)
G105340 NA other downstream 285479 1641267 ~ 1641732 (-)
G105285 NA other downstream 385505 1540730 ~ 1541706 (-)
G105492 NA other upstream 30168 1958484 ~ 1961587 (-)
G105636 NA other upstream 189763 2118079 ~ 2120501 (-)
G105938 NA other upstream 434683 2362999 ~ 2363531 (-)
G106001 NA other upstream 554625 2482941 ~ 2483356 (-)
G106003 NA other upstream 555544 2483860 ~ 2485123 (-)

Expression



Co-expression Network