G105178


Basic Information

Item Value
gene id G105178
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1942693 ~ 1942951 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU118486
AgtatgcaatcttcatagacaaacatcgTCAGTAAACTGGCCTtaccgaagagctcagtgactttcaacgtggtataagatgccatctttccaacaagtcacttCGTCaaaatgtatgccctgctagagctgcccctgtcaactctaagtgctgttattatcaagtggaaacgtctaggagcaacaacggctcagccgggaagtggtaggccacacaagctcacagaacgggaccgctgagcgCTGAAGCGCATAACGC

Function

NR:

description
PREDICTED: protein RCC2 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118486 True 259 lncRNA 0.44 1 1942693 1942951

Neighbor

gene id symbol gene type direction distance location
LOC110511503 LOC106605726 coding upstream 41245 1865365 ~ 1901456 (+)
slc6a3 slc6a3 coding upstream 89123 1816808 ~ 1853570 (+)
LOC110514512 LOC105016610 coding upstream 147755 1745298 ~ 1794938 (+)
tmem42a LOC106595323 coding upstream 235018 1704889 ~ 1707675 (+)
gpd1l LOC105023484 coding upstream 244324 1683561 ~ 1698369 (+)
LOC110516539 NA coding downstream 173602 2116553 ~ 2120455 (+)
LOC118944029 NA coding downstream 223170 2166121 ~ 2177996 (+)
LOC118944030 NA coding downstream 475235 2418186 ~ 2420621 (+)
LOC118937340 NA coding downstream 1035285 2978236 ~ 2978524 (+)
LOC118937337 NA coding downstream 1035835 2978786 ~ 2980193 (+)
G105177 NA non-coding upstream 412 1942062 ~ 1942281 (+)
G105176 NA non-coding upstream 2120 1940186 ~ 1940573 (+)
G105125 nrsn1 non-coding upstream 20007 1918082 ~ 1922686 (+)
G105124 NA non-coding upstream 24652 1917349 ~ 1918041 (+)
G105123 NA non-coding upstream 25523 1912464 ~ 1917170 (+)
G105189 NA non-coding downstream 25431 1968382 ~ 1969592 (+)
G105502 NA non-coding downstream 28773 1971724 ~ 1972076 (+)
G105504 NA non-coding downstream 29799 1972750 ~ 1973129 (+)
G105518 NA non-coding downstream 44796 1987747 ~ 1988168 (+)
G105525 NA non-coding downstream 59038 2001989 ~ 2002531 (+)
G105042 NA other upstream 232136 1708969 ~ 1710557 (+)
G105036 NA other upstream 242262 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 589830 1309202 ~ 1390936 (+)
G104761 NA other upstream 788944 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 1070178 860459 ~ 872515 (+)
G106019 NA other downstream 577765 2520716 ~ 2527972 (+)
G106122 NA other downstream 775010 2717961 ~ 2718525 (+)
G106240 NA other downstream 1031872 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 1263846 3006312 ~ 3391033 (+)
mboat1 LOC106573215 other downstream 1424254 3350582 ~ 3487129 (+)

Expression


Co-expression Network