XLOC_020786 (CABZ01064968.1)


Basic Information

Item Value
gene id XLOC_020786
gene name CABZ01064968.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5518314 ~ 5529241 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040980
ATGAAGTTCTCCGATTTATTTTTATACGTTTTGCTTTTGAAAGCTGTGTTTGCTGATTCAGGTGAAGTGGAGGTTCTATCAGTAATAGAGGGCGATTCTGTCACTCTACACTGTAGTCTTAATAGTATAAAGAAAGTTGAGGTGATCCTGTGGACATTTGGAACTGATCGTATAGCCGAAATCAACAAACTGATCGATAGCATCTCATTATATGTTCTTGATGAGAcattcagagacagactgaagcTGGATCATCAGaatggatctctgaccatcacggACATCACATTTAAACACGCTGGACTTTACGAACTGCAGATCATCGGTGGAAAAGAGGTCTTTTCCAAGAGATTCAATATTACAGTTTCTGCTCGTCTGCCTGTTCCTGTCCTTATCAGGGACtgttcttcctcctcctcctctccatcAGAGCAGTATTGTTCAGTGgtgtgttcagtggtgaatgtgagcgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaaTATCAGGATAAAAACACCTACAGATGTGTGATCAACAACACCATCAGCAACCAGACCACACGTCTGGACATCAACACACTCTGTTACACATCTGATGATCTCAATAAAGAAGACGACTTACCCGTCAGTCGTGTGCTGCTGATCTGCTTTGGTGTTGTAACTCCACTGATTCTGGCTGCAGTTGCGATCTTCTGCTGGAGACGCAGAAAAAGACAAGAACAATTTGATGGTGATGATACTGCTGAGATGGATGAACTGAAGACAGTGTCAGTGAGTGTGGGAGAGTCCGTCACTCTAAACACCGGCATCACCAAAATAAAACGTTTTGATGTGCTGCAGTGGAGGTTTGGAGAGCTAAATTCAGACGTCACAAACCCATTTATTGTTATAAACAGACTGAAAGGATCAAACAGTGTTGATGGTGCTTCTGGACATAATGAGCCATTCAAGGACCGATTACAGCTGGATAAACAAAATGGATATTTAACAATCAGCGATATCAGACCCACAGACTTTGgaatatataaactaaatatcGCCAGGAATCGGAGAAATGTGATCTCCAAGACATTTATTGTCAAAGATTCATCAGAAAAAGAAGAGGCATCAGAGACAGAATCACTGTTGACGACTGAATTGATCTCAGACACTGGTGTACATGTGGCGGAGCGGACAAACTCAGGAGGGCGGGGGGAAGCAGCTAATTTAACTCCCTTTAAACAGCCACCAACCCTGCCGACTACGCCAGAATGTGGCGGAGCAGACGAAGCGGGGGAGGAGCTAAATTGCTAGGTGTTAAGGTTTGCTCTCTTCGAACGACCCCAATCTATTTGATTTGATGAAACCGACTACGCCGCCTGGGATTCAAACCAAGAAATTGAAATATAAAAGGTCACACAGATTAGTCTCTTTTAAATGTTAAGGAGCAGACAGAAGACATACATGAGTATGTACAATAATACAAAAGCTTATTCgcaaatatttttgtgtttctaCCGAACATGTTTTAGCTGCAATTTAGATATTTATAACCGTTACATATTATAGTATGtttttgtgagtgtgtttttTCAGTGTTAATGAGCGAATTGGTGATGTTTGAAATCGTTGTTGCATGTGTaacctttaataaaaatatatttgactaATGGTTTCTTTGACACCAAATTTAGGTTAGGTTTTTGCTTTAATGTTGACACAACCTGTTTCAACAAACCTCTATATTGTCTGTTATGCTGATATTCACATAAACGACGTTGTTTATGTTTGTTAAATTACAtataatatcagttttaataatttaagagGAAGAAAAGAACAAAGTGGTTGTCACATGGGTTTGCAAAATCAATTTACAATACATTTGAATCACATTGTTTACAATGACATACTCAGTCTATTTTTGGCCATACTTGCACTTTTTTGAATCAGGTTCAGGTTAAAAGTCAGTTTTTCCATACAGTGTATTTCCTTTACAATTACTATCCATTGAGCCCATGTTGGAGGATCAAACTGAAACCATTTTCGagttacagttgaaatcagaagtttacatacactctaaaaaaaggaacataaccattttttaaaaatgtctgatggtaaatcatactaaacgtttactattttaggtctgttagaattacctaaatgatttacatttgctaaatgccagaataatgaaataattttttctttgagagtttttaaataaatgtctaGACAgtgaaaagtttacacacatttccttggtctttttttttagctttgctttaaaactgtataacttggtcaaatgttttgggtctcctttcacaagcttctcacaatagtttgaaggaattttggcccattcctcctgatagaattggtgtaactgagtcagatttgttggctgtcttgctcgcacaagctttttcaactctgcccacaaattttctataggattgagatcagggctttgtgatggccactccaaaacattcactttgttgtccttaaagcacattttaactaatttggcagtacgcttagggtcatggtctgtttggaagacctatttgtggccaagttttaatttcctggctgatgtctcgagatgttgcttcagtatttctacataatgttctttcttcatgatgccatctatgctgtgaagtggaccagtccctcctgcagcaaaacagccccacaacatgatgctgtcgcccccatacttcacagttgggatggtgttcctaggcttgtaagctttacCCTTTGTCcttcaaatgtaacactggtcattatggccaaacagttcaatcctagctccatcagagcacaggacatgtctccaacaattattctttttccctgtgtaattcagcaaattgtaatctggctttgttgttgattctggcttgttgatttttccatgttgtcacacaaggaagcagtgtgtttgaggttttgcttaaatactattctacagtcgTGCCTCCaatgaactcaaatgttgtcaatttgcCAATCAGAAGCTTCCAAAACCTTGaaaccatcatctgagctttttttcaatcttattgtatgtaaacttgactttcaagaaaagttataacaatttctcaaaaatctctctcattattctgctattaagcagtacagaaacaaatgtgaaaatcctgacttacctaaaagagagaaagtttagtcacattaacatctgactttttttaaatggttgtgcctgtttatacagtgtatgtaaacttctgtttTAAACTGTATGGTTTTTCTGCTACTTACCAAAATTATTTGTCATTTAGTTGAACCAGTTTCTAGTATTTTCCCAAAGTATAATGGCATAAATGAGTAATCCAATTCTTCTCcaatcatctttttttatttcagtcgcTACTTCATGCCAGCAGGGCTGTATTTTTGGGAAAGCCCAAAAAATGTGAACATGGTTCGCCATCGAGGTTCCACATTGTCTTCAACAAGAGCCCAAACTTTCAATGCCCGTACGCAATGCAGAGTTTAGGAGTTATAAAGAGCCTCATCAGACTTTTCCATCCAAACTCTCTCCAAGCTCTCCAGTTTGTAGTATTTGCATGTGTGACACACATATCTGTCCAGTCTTTCCCATATATTTGTTGGTCTAACACTTTCTAAGAAAAGTTTGAGCGATGTCTGCCCTCTAGTGGGAAATATACAGATTGTGCACTTTCTAATATAACGCGAATGGGAGGCTGTTCGTCTGAAAGTTCAATTTAAT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103696

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040980 True 3826 mRNA 0.38 6 5518314 5529241

Neighbor

gene id symbol gene type direction distance location
XLOC_020785 CABZ01064972.1 coding downstream 197 5483588 ~ 5518117 (-)
XLOC_020784 NA coding downstream 55199 5453243 ~ 5463115 (-)
XLOC_020783 zgc:194627 coding downstream 76421 5433093 ~ 5441893 (-)
XLOC_020782 s1pr4 coding downstream 194832 5320415 ~ 5323482 (-)
XLOC_020781 NA coding downstream 202725 5312971 ~ 5315589 (-)
XLOC_020787 zgc:171601 coding upstream 20493 5549734 ~ 5553007 (-)
XLOC_020788 NA coding upstream 95132 5624373 ~ 5631081 (-)
XLOC_020789 mcm2 coding upstream 102788 5632029 ~ 5655680 (-)
XLOC_020790 ccdc51 coding upstream 126515 5655756 ~ 5663354 (-)
XLOC_020791 dnase1l4.1 coding upstream 138130 5667371 ~ 5682494 (-)
XLOC_020780 NA non-coding downstream 243352 5267523 ~ 5274962 (-)
XLOC_020777 CR936300.1 non-coding downstream 373292 5140530 ~ 5145022 (-)
XLOC_020765 NA non-coding downstream 664499 4853062 ~ 4853815 (-)
XLOC_020792 NA non-coding upstream 172019 5701260 ~ 5724131 (-)
XLOC_020793 NA non-coding upstream 194087 5723328 ~ 5825199 (-)
XLOC_020795 BX005329.2 non-coding upstream 216062 5745303 ~ 5749450 (-)
XLOC_020798 NA non-coding upstream 330899 5860140 ~ 5872272 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_10766284_10769462 NA coding CI01000030 null 10766284 ~ 10769484 (+)
rainbow trout (Oncorhynchus mykiss) G204817 NA non-coding NC_048566.1 CM023220.2 92641487 ~ 92641687 (-)
eurasian perch (Perca fluviatilis) G170988 NA non-coding NC_053127.1 CM020924.1 35283252 ~ 35283899 (-)
mexican tetra (Astyanax mexicanus) G188219 NA non-coding NC_035918.1 CM008321.1 9125176 ~ 9125534 (+)