G105499


Basic Information

Item Value
gene id G105499
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1967504 ~ 1969307 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU119019
agtttgaaatatccaataaatgttgtttcacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcacagtATATTAAATTACTATGGTCTTCTGTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACAGTCTGACTGTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACTGTCTGATGTCTGACTGTTGTAACTGTCTGTTGTCTGACTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACTGTCTATTGTCTTCTATGTTGCAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACGGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTgtctgactgtgttgtaaCTGTCTATTGTCTGACTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACGGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTATGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTATGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTgttgtaactctgttgtctgaCTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACAGTCTGACTGTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAGCTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTATGTTGTAACTGCAGTTCAtttagagatacagtatattatcacACTGTTTATCAAAATAATCTCTGATTCGCTCAAGCCTCGTTGTGAGTATGCAGTGCTACTCAAAAACAGTCAGTCCTCAGGGGTTCTAGATTCCTAGAACTagatataatagacaggagtaaaCAGGGTTCTCGATTCCTAGAACTAGATATAATAGACAGGACTAAACATAGGGTTCTAGATTCCTAGAACTAGATATAATAGACAGGACTAAACAGGGTTTTAGATTCCTAGAACTAGATATAATAGACAGGAATAAACAGGCTTCTAGATTCCTAGA
>TU119020
agtttgaaatatccaataaatgttgtttcacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcacagtATATTAAATTACTATGGTCTTCTGTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACAGTCTGACTGTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACTGTCTGATGTCTGACTGTTGTAACTGTCTGTTGTCTGACTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACTGTCTATTGTCTTCTATGTTGCAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTGTTGTCTGACTGTGTTGTAACGGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTgtctgactgtgttgtaGCTGTCTATTGTCTGACTGTGTTGTAGCTGTCTATTGTCTGACTGTGTTGTAACTGTCTATTGTCTGACTATGTTGTAACTGCAGTTCAtttagagatacagtatattatcacACTGTTTATCAAAATAATCTCTGATTCGCTCAAGCCTCGTTGTGAGTATGCAGTGCTACTCAAAAACAGTCAGTCCTCAGGGGTTCTAGATTCCTAGAACTagatataatagacaggagtaaaCAGGGTTCTCGATTCCTAGAACTAGATATAATAGACAGGACTAAACATAGGGTTCTAGATTCCTAGAACTAGATATAATAGACAGGACTAAACAGGGTTTTAGATTCCTAGAACTAGATATAATAGACAGGAATAAACAGGCTTCTAGATTCCTAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119019 False 1413 lncRNA 0.40 4 1967504 1969307
TU119020 True 988 lncRNA 0.35 2 1967504 1969307

Neighbor

gene id symbol gene type direction distance location
nrsn1 nrsn1 coding downstream 41565 1921010 ~ 1925939 (-)
zdhhc3a zdhhc3 coding downstream 235171 1709516 ~ 1732333 (-)
kiaa1143 k1143 coding downstream 262641 1702951 ~ 1704863 (-)
LOC110515405 LOC106590999 coding downstream 284015 1573402 ~ 1683489 (-)
LOC110515934 gadl1 coding downstream 510371 1427251 ~ 1457133 (-)
LOC118937333 NA coding upstream 333329 2302636 ~ 2303881 (-)
LOC118937335 NA coding upstream 460968 2273420 ~ 2440302 (-)
sox4b sox4 coding upstream 477067 2446374 ~ 2449761 (-)
LOC110512766 LOC106593784 coding upstream 544403 2513710 ~ 2516419 (-)
LOC110514306 NA coding upstream 548880 2518187 ~ 2519022 (-)
G105495 NA non-coding downstream 3654 1963520 ~ 1963850 (-)
G105489 NA non-coding downstream 14616 1952412 ~ 1952888 (-)
G105478 NA non-coding downstream 30196 1936646 ~ 1937308 (-)
G105473 NA non-coding downstream 35325 1931271 ~ 1932179 (-)
G105472 NA non-coding downstream 39188 1927211 ~ 1928316 (-)
G105505 NA non-coding upstream 3375 1972682 ~ 1973050 (-)
G105574 NA non-coding upstream 19971 1989278 ~ 2080958 (-)
G105577 NA non-coding upstream 29289 1998596 ~ 1998853 (-)
G105586 NA non-coding upstream 55516 2024823 ~ 2025198 (-)
G105606 NA non-coding upstream 79384 2048691 ~ 2050005 (-)
G105492 NA other downstream 5917 1958484 ~ 1961587 (-)
G105428 NA other downstream 49477 1917351 ~ 1918027 (-)
G105427 NA other downstream 50509 1912592 ~ 1917188 (-)
G105340 NA other downstream 325772 1641267 ~ 1641732 (-)
G105636 NA other upstream 148772 2118079 ~ 2120501 (-)
G105938 NA other upstream 393692 2362999 ~ 2363531 (-)
G106001 NA other upstream 513634 2482941 ~ 2483356 (-)
G106003 NA other upstream 514553 2483860 ~ 2485123 (-)
LOC110506994 carmil1 other upstream 1783254 3705036 ~ 3924570 (-)

Expression


Co-expression Network