G105189


Basic Information

Item Value
gene id G105189
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 1968382 ~ 1969592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU118502
TCAGACAATAGACAGTTGCAACATAGAAGACAATAGACAGTTATAACACAGTCAGACAACAGACAGTTACAACAGTCAGACAACAGAGTTACAACAGTCAGACAATAGACAGTTACAACACAGTCAGACAATAGACAGTTACAACACAGTCAGACAACAGACAGTTACAACACAGTCAGACTGTTACAACACAGTCAGACAACAGACAGTTACAACAGTCAGACAATAGacaattacaacacagtcagacAATAGACAGTTACAACACAGTCAGACAATAGACAGTTACAACACAGTCAGACAATAGACAGTTACAACACAGTCAGACAATAGACCGTTACAACACAGTCAGACAACAGACAGTTACAACACAGTCAGACAATAGACAGTTGCAACATAGAAGACAATAGACAGTTACAACACAGTCAGACAACAGACAGTTACAACAGTCAGACAACAGACAGTTACAACAGTCAGACATCAGACAGTTACAACACAGTCAGACAACAGACAGTTACAACACAGTCAGACTGTTACAACACAGTCAGACAACAGACAGTTACAACAGTCAGACAATAGACAGTTACAACACAGTCAGACAATAGACAGTTACAACACAGTCAGACAATAGACAGTTACAACACAGAAGACCATAGTAATTTAATATactgtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtgaaacaacatttattggatatttcaaactttttgaacaaatcaaaaactgaaaaattgtccgtgcaaaattattcagccaccttactttcagtgcagcaaactctctccagaagttcagtgaggatctcttaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacctgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttgaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtgaagaagttta

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118502 True 1114 lncRNA 0.41 2 1968382 1969592

Neighbor

gene id symbol gene type direction distance location
LOC110511503 LOC106605726 coding upstream 66934 1865365 ~ 1901456 (+)
slc6a3 slc6a3 coding upstream 114812 1816808 ~ 1853570 (+)
LOC110514512 LOC105016610 coding upstream 173444 1745298 ~ 1794938 (+)
tmem42a LOC106595323 coding upstream 260707 1704889 ~ 1707675 (+)
gpd1l LOC105023484 coding upstream 270013 1683561 ~ 1698369 (+)
LOC110516539 NA coding downstream 146961 2116553 ~ 2120455 (+)
LOC118944029 NA coding downstream 196529 2166121 ~ 2177996 (+)
LOC118944030 NA coding downstream 448594 2418186 ~ 2420621 (+)
LOC118937340 NA coding downstream 1008644 2978236 ~ 2978524 (+)
LOC118937337 NA coding downstream 1009194 2978786 ~ 2980193 (+)
G105178 NA non-coding upstream 25431 1942693 ~ 1942951 (+)
G105177 NA non-coding upstream 26101 1942062 ~ 1942281 (+)
G105176 NA non-coding upstream 27809 1940186 ~ 1940573 (+)
G105125 nrsn1 non-coding upstream 45696 1918082 ~ 1922686 (+)
G105124 NA non-coding upstream 50341 1917349 ~ 1918041 (+)
G105502 NA non-coding downstream 2132 1971724 ~ 1972076 (+)
G105504 NA non-coding downstream 3158 1972750 ~ 1973129 (+)
G105518 NA non-coding downstream 18155 1987747 ~ 1988168 (+)
G105525 NA non-coding downstream 32397 2001989 ~ 2002531 (+)
G105527 NA non-coding downstream 36869 2006461 ~ 2007221 (+)
G105042 NA other upstream 257825 1708969 ~ 1710557 (+)
G105036 NA other upstream 267951 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 615519 1309202 ~ 1390936 (+)
G104761 NA other upstream 814633 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 1095867 860459 ~ 872515 (+)
G106019 NA other downstream 551124 2520716 ~ 2527972 (+)
G106122 NA other downstream 748369 2717961 ~ 2718525 (+)
G106240 NA other downstream 1005231 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 1237205 3006312 ~ 3391033 (+)
mboat1 LOC106573215 other downstream 1397613 3350582 ~ 3487129 (+)

Expression


Co-expression Network