Gene
RNA
| Item | Value |
|---|---|
| gene id | G105574 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 1989278 ~ 2080958 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Retrotransposable element Tf2 protein type 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU119137 | True | 629 | lncRNA | 0.57 | 2 | 1989278 | 2080958 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| nrsn1 | nrsn1 | coding | downstream | 63339 | 1921010 ~ 1925939 (-) |
| zdhhc3a | zdhhc3 | coding | downstream | 256945 | 1709516 ~ 1732333 (-) |
| kiaa1143 | k1143 | coding | downstream | 284415 | 1702951 ~ 1704863 (-) |
| LOC110515405 | LOC106590999 | coding | downstream | 305789 | 1573402 ~ 1683489 (-) |
| LOC110515934 | gadl1 | coding | downstream | 532145 | 1427251 ~ 1457133 (-) |
| LOC118937333 | NA | coding | upstream | 221678 | 2302636 ~ 2303881 (-) |
| LOC118937335 | NA | coding | upstream | 349317 | 2273420 ~ 2440302 (-) |
| sox4b | sox4 | coding | upstream | 365416 | 2446374 ~ 2449761 (-) |
| LOC110512766 | LOC106593784 | coding | upstream | 432752 | 2513710 ~ 2516419 (-) |
| LOC110514306 | NA | coding | upstream | 437229 | 2518187 ~ 2519022 (-) |
| G105505 | NA | non-coding | downstream | 16228 | 1972682 ~ 1973050 (-) |
| G105499 | NA | non-coding | downstream | 19971 | 1967504 ~ 1969307 (-) |
| G105495 | NA | non-coding | downstream | 25428 | 1963520 ~ 1963850 (-) |
| G105489 | NA | non-coding | downstream | 36390 | 1952412 ~ 1952888 (-) |
| G105478 | NA | non-coding | downstream | 51970 | 1936646 ~ 1937308 (-) |
| G105626 | NA | non-coding | upstream | 11509 | 2092467 ~ 2093474 (-) |
| G105629 | NA | non-coding | upstream | 23708 | 2104666 ~ 2108959 (-) |
| G105636 | NA | non-coding | upstream | 37121 | 2118079 ~ 2120501 (-) |
| G105638 | NA | non-coding | upstream | 40278 | 2121236 ~ 2121464 (-) |
| G105640 | NA | non-coding | upstream | 45822 | 2126780 ~ 2127108 (-) |
| G105492 | NA | other | downstream | 27691 | 1958484 ~ 1961587 (-) |
| G105428 | NA | other | downstream | 71251 | 1917351 ~ 1918027 (-) |
| G105427 | NA | other | downstream | 72283 | 1912592 ~ 1917188 (-) |
| G105340 | NA | other | downstream | 347546 | 1641267 ~ 1641732 (-) |
| G105938 | NA | other | upstream | 282041 | 2362999 ~ 2363531 (-) |
| G106001 | NA | other | upstream | 401983 | 2482941 ~ 2483356 (-) |
| G106003 | NA | other | upstream | 402902 | 2483860 ~ 2485123 (-) |
| LOC110506994 | carmil1 | other | upstream | 1671603 | 3705036 ~ 3924570 (-) |
