XLOC_020787 (zgc:171601)


Basic Information

Item Value
gene id XLOC_020787
gene name zgc:171601
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5549734 ~ 5553007 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040981
ATCATGAGAATATAAAGGAGAATATACATCACAAATGGTTACCGCTATAAAGTCTATTGATGTTTTGGTTAAATATAGTGTTATTAGTTAAGGTGTGTCGCGGGTTTGAATGGACCGCCAATGAAGACAAGAAAGTTTGCTAAGTTTACATCTAACTACATCAAAATGACGCTATTTTGTTTATGTATGTGCTTCTTGCTGAAAGGTGCGTTTGGTAATATCAAATTGGTGCATGACGGAGATTCTGTCACGCTACAATCTGCTCTTACAAATGTTCAGAAATATGAGCGTGTTCTATGGACGTTTGGACCTGACAGCACCCGAATAGCTCAAATCAACAACGCCATCAACAAGATATCAGTATATAATGAAGTACTGAACGGGAAATTCAGAGGCAAACTGAGTTTGGATGCTcaaactggatctctgaccatcgcAAACGCAACATCCCAACACGCTGGACTCTACGAATTAAATACTGTCGGCGGAAATGACGTCTTATCCAAGCAGTTCAGAGTTATTATTTTAGCTCATCTGCCTGCTCCTGTCCTCATGAGAAACTCTTCTCAATGTtcttcatcctcatcttcatcagtGCAGTATTGTTCAGTGctgtgttcagtggtgaatgtgagcgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagtgtgtctgatctcagcatcagtctcactctacctctggaggtggaatatcaggatagaaacacctacagctgtgtgaTCGACAACACCATCAGCAACCAGACCACACATCTGGATATCAGCACACTCTGTCAGCCATGTGAAGTGGGTGTGTCAAGTTTGAATTCAGGAAACAGCGTACCCTTCGGTGATGTGGTTCTGATCTGCATAGGCATCGCAGTTACATTTGTAATCTTGGCAGCAGCTGGGATGTTCAGTATTTACTGGagatataaaaaaacacatcaaacttGCCAGACTCCTGTGCAACAGGTTTCTGAGGTGCATGAAGGTGATGATATGGTTGAGATGGATGAACTGAAGACAATGTCTGTGAGTGTGGGAGGGTCCGTCATGCTAAACACTGGTTTCACCAAGATAAAAAGTTGTGATGTGCTGCAGTGGAGGTTTGGAGAGCCAAATTCAGACGTCACAAACCCATTTGTTGTCATAAGAAGACTGAACGAACCAGACTTCACTGAATATGCTGGTCATGACGAGACATTCAGAGACCGATTACAGCTGGATCAACAAAACGGATATCTAAAAATCAGTGATATCAGACCCACAGACTTTGgtatatataaactaaatattgCCAGGAATGGGAGAAATGTGATCTCCAAGACATTTATTGTCAAAGATTCATCTGAAGACATCAGAGAGGCATCGGAGACCGAATCGCTGTTAAAGACAGAAATGATCTCCGACAGTCGTGTATAGCAACTGTTACTAATccttataaaacatttgttttttatgg

Function

symbol description
zgc:171601 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080220-33 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000104592

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040981 True 1486 mRNA 0.42 7 5549734 5553007

Neighbor

gene id symbol gene type direction distance location
XLOC_020786 CABZ01064968.1 coding downstream 20493 5518314 ~ 5529241 (-)
XLOC_020785 CABZ01064972.1 coding downstream 31617 5483588 ~ 5518117 (-)
XLOC_020784 NA coding downstream 86619 5453243 ~ 5463115 (-)
XLOC_020783 zgc:194627 coding downstream 107841 5433093 ~ 5441893 (-)
XLOC_020782 s1pr4 coding downstream 226252 5320415 ~ 5323482 (-)
XLOC_020788 NA coding upstream 71366 5624373 ~ 5631081 (-)
XLOC_020789 mcm2 coding upstream 79022 5632029 ~ 5655680 (-)
XLOC_020790 ccdc51 coding upstream 102749 5655756 ~ 5663354 (-)
XLOC_020791 dnase1l4.1 coding upstream 114364 5667371 ~ 5682494 (-)
XLOC_020792 NA coding upstream 148253 5701260 ~ 5724131 (-)
XLOC_020781 NA non-coding downstream 234145 5312971 ~ 5315589 (-)
XLOC_020780 NA non-coding downstream 274772 5267523 ~ 5274962 (-)
XLOC_020777 CR936300.1 non-coding downstream 404712 5140530 ~ 5145022 (-)
XLOC_020765 NA non-coding downstream 695919 4853062 ~ 4853815 (-)
XLOC_020793 NA non-coding upstream 170321 5723328 ~ 5825199 (-)
XLOC_020795 BX005329.2 non-coding upstream 192296 5745303 ~ 5749450 (-)
XLOC_020798 NA non-coding upstream 307133 5860140 ~ 5872272 (-)

Expression


Co-expression Network