G105636


Basic Information

Item Value
gene id G105636
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2118079 ~ 2120501 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU119210
tggaaTAGGGCTACAATGTTATCATGGAACTAAAGACACGGCGTTCTCTACTTGAGGATGCTGAACTTTATTGATGACATGACATGCGTCCATGATGTTTTACTTCATTCAATGTATACAGAAAATAACATTTGGAAATCATCGTAAAAATTACGCCATGCTTCTGGAGTCAACGGCTATTCTGTTGTTGACCCAATCTGTCGACATGGTCAGTCATAATGTAATCATTTGGGCTACTACAGTATCAGAACATGGACTGATATTTCATCCGgccaagatgtgtgtgtgtgtaatacgtCTGTATTTGTAAAGGAATGTAATTAGTTGACAGTATCCTAACCAGTATCCTAACCCATATCCTAACCTCGTCCCCAGTTGTCCCTTGTGTTTACTGTTTGTCAGAATATTGTGACAACAAAACATACCATGGTCACCCCATATTTCCATGTACTATTTGATGCAGGCCATTGATCCTGTCTTACTGCCCATTGGTCTAACTCTACATGTAGCCCCGCCCACTTGCTTGTGTGTCATTGGGCCGGAACGCACCGGAAATTGGAAGACAAACTGGCCGTGCCGTTGTTGCCAGGCTACACAAGGTGGTTATTATGGGTCTCTTTAGTAGATCTTAAAGGCGGTGAGCTTTAAGTCCCCTCTGACACGGACGTAGGTAATGACGTCCAGGACGGTACGGTTGAGGAATTTGATCTCATGTCCATTAGGCATCTCCACTTCAAACACGTCTCCGGTCAGCTTCAGGACAAtctCCTTCGGTCCAGTCAGGACTCTCTTCCCATCCCAACAATTGTCCCACCTTGACAGTAGAACCCCtttggaggtcactgtgtttctctctctcctcgtgaCCCCAGCAGCCGTCAATCTTGGAGTTGCACACAAGCACAGCACCGTCCGTGTCATCCTCAAAACGTGGGTTGAAGTGCAGTGCCAGGTGATCTTCGTCACAGCCCAGTTCTATCTGAA
>TU119215
tggaaTAGGGCTACAATGTTATCATGGAACTAAAGACACGGCGTTCTCTACTTGAGGATGCTGAACTTTATTGATGACATGACATGCGTCCATGATGTTTTACTTCATTCAATGTATACAGAAAATAACATTTGGAAATCATCGTAAAAATTACGCCATGCTTCTGGAGTCAACGGCTATTCTGTTGTTGACCCAATCTGTCGACATGGTCAGTCATAATGTAATCATTTGGGCTACTACAGTATCAGAACATGAGCGATTAGGTcagtaataatgtaataatttGGGCTACTACAGTATCAGAACATGAGAGATTAGGTCAGTCATAATGTAATCATTTGGGCTACTACAGTATCAGAACATGAGAGATTAGGTCAGTAATAATGTAATCATTTGGGTTACTACAGTATCAGAACATGAGAGATTAGGTCAGTCATAATGTAATCATTTGGGCTACTACAGTATCAGAACATGGACTGATATTTCATCCGgccaagatgtgtgtgtgtgtaatacgtCTGTATTTGTAAAGGAATGTAATTAGTTGACAGTATCCTAACCAGTATCCTAACCCATATCCTAACCTCGTCCCCAGTTGTCCCTTGTGTTTACTGTTTGTCAGAATATTGTGACAACAAAACATACCATGGTCACCCCATATTTCCATGTACTATTTGATGCAGGCCATTGATCCTGTCTTACTGCCCATTGGTCTAACTCTACATGTAGCCCCGCCCACTTGCTTGTGTGTCATTGGGCCGGAACGCACCGGAAATTGGAAGACAAACTGGCCGTGCCGTTGTTGCCAGGCTACACAAGGTGGTTATTATGGGTCTCTTTAGTAGATCTTAAAGGCGGTGAGCTTTAAGTCCCCTCTGACACGGACGTAGGTAATGACGTCCAGGACGGTACGGTTGAGGAATTTGATCTCATGTCCATTAGGCATCTCCACTTCAAACACGTCTCCGGTCAGCTTCAGGACAAtctCCTTCGGTCCAGTCAGGACTCTCTTCCCATCCCAACAATTGTCCCACCTTGACAGTAGAACCCCtttggaggtcactgtgtttctctctctcctcgtgaCCCCAGCAGCCGTCAATCTTGGAGTTGCACACAAGCACAGCACCGTCCGTGTCATCCTCAAAACGTGGGTTGAAGTGCAGTGCCAGGTGATCTTCGTCACAGCCCAGTTCTATCTGAA
>TU119220
tggaaTAGGGCTACAATGTTATCATGGAACTAAAGACACGGCGTTCTCTACTTGAGGATGCTGAACTTTATTGATGACATGACATGCGTCCATGATGTTTTACTTCATTCAATGTATACAGAAAATAACATTTGGAAATCATCGTAAAAATTACGCCATGCTTCTGGAGTCAACGGCTATTCTGTTGTTGACCCAATCTGTCGACATGGTCAGTAATAATGTAATCATTTGGGCTACTACAGTATCAGAACATGAGAGATTAGGTCAGTCATAATGTAATCATTTGGGCTACTACAGTATCAGAACATGAGCGATTAGGTcagtaataatgtaataatttGGGCTACTACAGTATCAGAACATGAGAGATTAGGTCAGTCATAATGTAATCATTTGGGCTACTACAGTATCAGAACATGAGAGATTAGGTCAGTCATAATGTAATCATTTGGGCTACTACAGTATCAGAACATGAGAGATTAGGTCAGTAATAATGTAATCATTTGGGTTACTACAGTATCAGAACATGAGAGATTAGGTCAGTAATAATGTAATCATTTGGGCTACTACGGTATAAGAATAAATTCTTTCTCACCAAAACAAGTAAAACATTGACTGATATTTCATCCGgccaagatgtgtgtgtgtgtaatacgtCTGTATTTGTAAAGGAATGTAATTAGTTGACAGTATCCTAACCAGTATCCTAACCCATATCCTAACCTCGTCCCCAGTTGTCCCTTGTGTTTACTGTTTGTCAGAATATTGTGACAACAAAACATACCATGGTCACCCCATATTTCCATGTACTATTTGATGCAGGCCATTGATCCTGTCTTACTGCCCATTGGTCTAACTCTACATGTAGCCCCGCCCACTTGCTTGTGTGTCATTGGGCCGGAACGCACCGGAAATTGGAAGACAAACTGGCCGTGCCGTTGTTGCCAGGCTACACAAGGTGGTTATTATGGGTCTCTTTAGTAGATCTTAAAGGCGGTGAGCTTTAAGTCCCCTCTGACACGGACGTAGGTAATGACGTCCAGGACGGTACGGTTGAGGAATTTGATCTCATGTCCATTAGGCATCTCCACTTCAAACACGTCTCCGGTCAGCTTCAGGACAAtctCCTTCGGTCCAGTCAGGACTCTCTTCCCATCCCAACAATTGTCCCACCTTGACAGTAGAACCCCtttggaggtcactgtgtttctctctctcctcgtgaCCCCAGCAGCCGTCAATCTTGGAGTTGCACACAAGCACAGCACCGTCCGTGTCATCCTCAAAACGTGGGTTGAAGTGCAGTGCCAGGTGATCTTCGTCACAGCCCAGTTCTATCTGAA
>TU119222
tggaaTAGGGCTACAATGTTATCATGGAACTAAAGACACGGCGTTCTCTACTTGAGGATGCTGAACTTTATTGATGACATGACATGCGTCCATGATGTTTTACTTCATTCAATGTATACAGAAAATAACATTTGGAAATCATCGTAAAAATTACGCCATGCTTCTGGAGTCAACGGCTATTCTGTTGTTGACCCAATCTGTCGACATGGTCAGTCATAATGTAATCATTTGGGCTACTACAGTATCAGAACATGAGCGATTAGGTcagtaataatgtaataatttGGGCTACTACAGTATCAGAACATGAGAGATTAGGTCAGTCATAATGTAATCATTTGGGCTACTACAGTATCAGAACATGGACTGATATTTCATCCGgccaagatgtgtgtgtgtgtaatacgtCTGTATTTGTAAAGGAATGTAATTAGTTGACAGTATCCTAACCAGTATCCTAACCCATATCCTAACCTCGTCCCCAGTTGTCCCTTGTGTTTACTGTTTGTCAGAATATTGTGACAACAAAACATACCATGGTCACCCCATATTTCCATGTACTATTTGATGCAGGCCATTGATCCTGTCTTACTGCCCATTGGTCTAACTCTACATGTAGCCCCGCCCACTTGCTTGTGTGTCATTGGGCCGGAACGCACCGGAAATTGGAAGACAAACTGGCCGTGCCGTTGTTGCCAGGCTACACAAGGTGGTTATTATGGGTCTCTTTAGTAGATCTTAAAGGCGGTGAGCTTTAAGTCCCCTCTGACACGGACGTAGGTAATGACGTCCAGGACGGTACGGTTGAGGAATTTGATCTCATGTCCATTAGGCATCTCCACTTCAAACACGTCTCCGGTCAGCTTCAGGACAAtctCCTTCGGTCCAGTCAGGACTCTCTTCCCATCCCAACAATTGTCCCACCTTGACAGTAGAACCCCtttggaggtcactgtgtttctctctctcctcgtgaCCCCAGCAGCCGTCAATCTTGGAGTTGCACACAAGCACAGCACCGTCCGTGTCATCCTCAAAACGTGGGTTGAAGTGCAGTGCCAGGTGATCTTCGTCACAGCCCAGTTCTATCTGAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119210 False 984 TUCP 0.46 5 2118079 2120501
TU119215 False 1204 lncRNA 0.44 7 2118079 2120501
TU119220 False 1343 lncRNA 0.41 6 2118079 2120501
TU119222 True 1094 lncRNA 0.45 6 2118079 2120501

Neighbor

gene id symbol gene type direction distance location
nrsn1 nrsn1 coding downstream 192140 1921010 ~ 1925939 (-)
zdhhc3a zdhhc3 coding downstream 385746 1709516 ~ 1732333 (-)
kiaa1143 k1143 coding downstream 413216 1702951 ~ 1704863 (-)
LOC110515405 LOC106590999 coding downstream 434590 1573402 ~ 1683489 (-)
LOC110515934 gadl1 coding downstream 660946 1427251 ~ 1457133 (-)
LOC118937333 NA coding upstream 182135 2302636 ~ 2303881 (-)
LOC118937335 NA coding upstream 309774 2273420 ~ 2440302 (-)
sox4b sox4 coding upstream 325873 2446374 ~ 2449761 (-)
LOC110512766 LOC106593784 coding upstream 393209 2513710 ~ 2516419 (-)
LOC110514306 NA coding upstream 397686 2518187 ~ 2519022 (-)
G105629 NA non-coding downstream 9120 2104666 ~ 2108959 (-)
G105626 NA non-coding downstream 24605 2092467 ~ 2093474 (-)
G105622 NA non-coding downstream 46528 2070719 ~ 2071551 (-)
G105613 NA non-coding downstream 57427 2059883 ~ 2060652 (-)
G105606 NA non-coding downstream 68074 2048691 ~ 2050005 (-)
G105638 NA non-coding upstream 735 2121236 ~ 2121464 (-)
G105640 NA non-coding upstream 6279 2126780 ~ 2127108 (-)
G105641 NA non-coding upstream 9609 2130110 ~ 2130359 (-)
G105643 NA non-coding upstream 13746 2134247 ~ 2134450 (-)
G105656 NA non-coding upstream 28397 2148898 ~ 2149330 (-)
G105492 NA other downstream 156492 1958484 ~ 1961587 (-)
G105428 NA other downstream 200052 1917351 ~ 1918027 (-)
G105427 NA other downstream 201084 1912592 ~ 1917188 (-)
G105340 NA other downstream 476347 1641267 ~ 1641732 (-)
G105938 NA other upstream 242498 2362999 ~ 2363531 (-)
G106001 NA other upstream 362440 2482941 ~ 2483356 (-)
G106003 NA other upstream 363359 2483860 ~ 2485123 (-)
LOC110506994 carmil1 other upstream 1632060 3705036 ~ 3924570 (-)
G107456 NA other upstream 1870825 3991326 ~ 3992847 (-)
G105574 NA non-coding downstream 37121 1989278 ~ 2080958 (-)

Expression


Co-expression Network