G105642


Basic Information

Item Value
gene id G105642
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2132755 ~ 2133621 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU119230
ctctctctatgacccctgacaggtaccaggagactggtctgAAGTCAGCAccgtccatgtcctctctctatgaCCCCTGACAGgtaccaggagactggtctctctctatgaccctgacaggtaccaggagactggtctctctctatgaccctgacaggtaccaggagactggtctctctctatgaccctgacaggtaccaggagactggtctctctcta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119230 True 219 lncRNA 0.38 2 2132755 2133621

Neighbor

gene id symbol gene type direction distance location
LOC110516539 NA coding upstream 12300 2116553 ~ 2120455 (+)
LOC110511503 LOC106605726 coding upstream 231307 1865365 ~ 1901456 (+)
slc6a3 slc6a3 coding upstream 279185 1816808 ~ 1853570 (+)
LOC110514512 LOC105016610 coding upstream 337817 1745298 ~ 1794938 (+)
tmem42a LOC106595323 coding upstream 425080 1704889 ~ 1707675 (+)
LOC118944029 NA coding downstream 32500 2166121 ~ 2177996 (+)
LOC118944030 NA coding downstream 284565 2418186 ~ 2420621 (+)
LOC118937340 NA coding downstream 844615 2978236 ~ 2978524 (+)
LOC118937337 NA coding downstream 845165 2978786 ~ 2980193 (+)
mboat1 LOC106573215 coding downstream 1273566 3350582 ~ 3487129 (+)
G105639 NA non-coding upstream 8720 2123495 ~ 2124035 (+)
G105572 NA non-coding upstream 25127 2103381 ~ 2107628 (+)
G105571 NA non-coding upstream 31115 2100955 ~ 2101640 (+)
G105556 NA non-coding upstream 65829 2065137 ~ 2066926 (+)
G105548 NA non-coding upstream 82441 2048681 ~ 2050314 (+)
G105654 NA non-coding downstream 14845 2148466 ~ 2148711 (+)
G105670 NA non-coding downstream 25951 2159572 ~ 2160487 (+)
G105672 NA non-coding downstream 27194 2160815 ~ 2161029 (+)
G105673 NA non-coding downstream 27774 2161395 ~ 2163040 (+)
G105683 NA non-coding downstream 50427 2184048 ~ 2191289 (+)
G105042 NA other upstream 422198 1708969 ~ 1710557 (+)
G105036 NA other upstream 432324 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 779892 1309202 ~ 1390936 (+)
G104761 NA other upstream 979006 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 1260240 860459 ~ 872515 (+)
G106019 NA other downstream 387095 2520716 ~ 2527972 (+)
G106122 NA other downstream 584340 2717961 ~ 2718525 (+)
G106240 NA other downstream 841202 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 1073176 3006312 ~ 3391033 (+)

Expression


Co-expression Network