G105803


Basic Information

Item Value
gene id G105803
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2331403 ~ 2333175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU119429
CTGTCTGGCTGTGTGATATGCTGAGGTCAACAGTATATTACtagagaacaggacaggagacCTTCTGGCTGTGTGATATGCTGAGGTCATCAGTGTATTACtagagaacaggacaggagacTGTCTGGTGTGTGATATGCTGAGGTCAACAGTGAATTACtagagaacaggacaggagacTGTCTGGCTGTGTGATATGCTGAGGTCAACAGTGTATTACtagagaacaggacaggagacTGTCTGGCTGTGTGATATGCTGAGGTCAACAGTGTATTActagagaacagaacaggagaCTGTCTGGC
>TU119426
TCTGGCTGTGTGATATGCTGAGGTCAACAGTGTATTACTAGAGAACAGGAGACTGTCTGGCTGTGTGATAGGCTGAGGTCAACAGTGTATTACTAGAGAACAAGACAGGAGACTGTCTGGCTGTGTGATATGCTGAGGTCAACAGTGTATTACtagagaacaggacaggagacTGTCTGGCTGTGTGATGTGCTGAGGTCAACAGTGTATTACtagagaacaggacaggagacTGTCTGGCTGTGTGATATGCTGAGGTCAACAGTGTATTACTAGAGAACAGGAGACTGTCTGGCTGTGTGATATGCTGAGGTCAACAGTGAATTACtagagaacaggacaggagacTGTCTGGCTGTGTGATATGCTGAGGTCAACAGTGTATTACtagagaacaggacaggagacTGTCTGGCTGTGTGATATGCTGAGGTCAACAGTGTATTActagagaacagaacaggagaCTGTCTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119429 False 308 lncRNA 0.46 3 2331403 2333175
TU119426 True 476 lncRNA 0.36 2 2332640 2333175

Neighbor

gene id symbol gene type direction distance location
LOC118944029 NA coding upstream 153407 2166121 ~ 2177996 (+)
LOC110516539 NA coding upstream 210948 2116553 ~ 2120455 (+)
LOC110511503 LOC106605726 coding upstream 429955 1865365 ~ 1901456 (+)
slc6a3 slc6a3 coding upstream 477833 1816808 ~ 1853570 (+)
LOC110514512 LOC105016610 coding upstream 536465 1745298 ~ 1794938 (+)
LOC118944030 NA coding downstream 85011 2418186 ~ 2420621 (+)
LOC118937340 NA coding downstream 645061 2978236 ~ 2978524 (+)
LOC118937337 NA coding downstream 645611 2978786 ~ 2980193 (+)
mboat1 LOC106573215 coding downstream 1074012 3350582 ~ 3487129 (+)
colec10 LOC106591867 coding downstream 1717608 4050783 ~ 4065607 (+)
G105794 NA non-coding upstream 20306 2310629 ~ 2311097 (+)
G105792 NA non-coding upstream 21255 2308664 ~ 2310148 (+)
G105770 NA non-coding upstream 59758 2271062 ~ 2271645 (+)
G105762 NA non-coding upstream 73647 2257518 ~ 2257756 (+)
G105760 NA non-coding upstream 74496 2256547 ~ 2256907 (+)
G105804 NA non-coding downstream 649 2333824 ~ 2334341 (+)
G105806 NA non-coding downstream 2873 2336048 ~ 2336506 (+)
G105822 NA non-coding downstream 29681 2362856 ~ 2363663 (+)
G105824 NA non-coding downstream 31618 2364793 ~ 2365507 (+)
G105837 NA non-coding downstream 48170 2381345 ~ 2382047 (+)
G105042 NA other upstream 620846 1708969 ~ 1710557 (+)
G105036 NA other upstream 630972 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 978540 1309202 ~ 1390936 (+)
G104761 NA other upstream 1177654 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 1458888 860459 ~ 872515 (+)
G106019 NA other downstream 187541 2520716 ~ 2527972 (+)
G106122 NA other downstream 384786 2717961 ~ 2718525 (+)
G106240 NA other downstream 641648 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 873622 3006312 ~ 3391033 (+)

Expression


Co-expression Network