G105847


Basic Information

Item Value
gene id G105847
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2393482 ~ 2395688 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU119494
CGTACTGACAGTCTATTTAAACCACGTATTGACAGTCAATTTAAACCACGTACTGACAGTCTATTTAAACCACGTACTGACAGTCTATTTAAACCACGTACTGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAACCACATACTGACAGTCTATTTAAACCACGTACTGACAGTCTATTTAAACCACATAATGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAAC
>TU119495
CGTACTGACAGTCTATTTAAACCACGTATTGACAGTCAATTTAAACCACGTACTGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAACCATGCCAGTGTATATCAGCCACGTACTGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAACCACGTACTGACAGTCTATTTAAACCACGTACTGACAGTCTATTTAAACCACATACTGACAGTCTATTTAAACCATGCCAGTGTATATCAGCCACATACTGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAACCATGCCAGTGTATATCAGCCACATACTGACAGTCTATTTAAACCATGCCAGTGTATATCAGCCACGTACTGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAACCACATACTGACAGTCTATTTAAACCACGTACTGACAGTCTATTTAAACCACATAATGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAAC
>TU119491
TGTACTGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAACCATGCCAGTGTATATCAGCCACATACTGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAACCATGCCAGTGTTTATCAGCCACGTACTGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAACCATGCCAGTGTATATCAGCCACATACTGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAACCATGCCAGTGTTTATCAGCCACGTACTGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAACCATGCCAGTGTTTATCAGCCACGTACTGACAGTCTATTTAAACCATGCCAGTGTTTATCAGCCACGTACTGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAACCACGTACTGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAACCACATACTGACAGTCTATTTAAACCACGTACTGACAGTCTATTTAAACCACATAATGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAAC
>TU119493
AAACCTTGTACTGACAGTCTATTTAAACCATGCCAGTGTTTATCAGCCACGTCCTGACAGTCTATTTAAACCATGCCAGTGTTTATCAGCCACGTACTGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAACCACGTACTGACAGTCTATTTAAACCACATACTGACAGTCTATTTAAACCACATACTGACAGTCTATTTAAACCATGCCAGTGTATATCAGCCACGTACTGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAACCACATACTGACAGTCTATTTAAACCACGTACTGACAGTCTATTTAAACCACATAATGACAGTCTATTTAAACCATGTACTGACAGTCTATTTAAAC

Function

NR:

description
Nicolin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119494 False 238 lncRNA 0.35 3 2393482 2395688
TU119495 False 506 lncRNA 0.37 3 2393482 2395688
TU119491 False 616 lncRNA 0.37 2 2393755 2395688
TU119493 True 373 lncRNA 0.37 2 2394539 2395688

Neighbor

gene id symbol gene type direction distance location
LOC118944029 NA coding upstream 215486 2166121 ~ 2177996 (+)
LOC110516539 NA coding upstream 273027 2116553 ~ 2120455 (+)
LOC110511503 LOC106605726 coding upstream 492034 1865365 ~ 1901456 (+)
slc6a3 slc6a3 coding upstream 539912 1816808 ~ 1853570 (+)
LOC110514512 LOC105016610 coding upstream 598544 1745298 ~ 1794938 (+)
LOC118944030 NA coding downstream 22498 2418186 ~ 2420621 (+)
LOC118937340 NA coding downstream 582548 2978236 ~ 2978524 (+)
LOC118937337 NA coding downstream 583098 2978786 ~ 2980193 (+)
mboat1 LOC106573215 coding downstream 1011499 3350582 ~ 3487129 (+)
colec10 LOC106591867 coding downstream 1655095 4050783 ~ 4065607 (+)
G105839 NA non-coding upstream 8112 2384991 ~ 2385370 (+)
G105837 NA non-coding upstream 11435 2381345 ~ 2382047 (+)
G105824 NA non-coding upstream 27975 2364793 ~ 2365507 (+)
G105822 NA non-coding upstream 29819 2362856 ~ 2363663 (+)
G105806 NA non-coding upstream 56976 2336048 ~ 2336506 (+)
G105853 NA non-coding downstream 13829 2409517 ~ 2410453 (+)
G105871 NA non-coding downstream 50404 2446092 ~ 2446640 (+)
G105878 NA non-coding downstream 57472 2453160 ~ 2453377 (+)
G105880 NA non-coding downstream 60074 2455762 ~ 2456194 (+)
G105882 NA non-coding downstream 62914 2458602 ~ 2458918 (+)
G105042 NA other upstream 682925 1708969 ~ 1710557 (+)
G105036 NA other upstream 693051 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 1040619 1309202 ~ 1390936 (+)
G104761 NA other upstream 1239733 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 1520967 860459 ~ 872515 (+)
G106019 NA other downstream 125028 2520716 ~ 2527972 (+)
G106122 NA other downstream 322273 2717961 ~ 2718525 (+)
G106240 NA other downstream 579135 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 811109 3006312 ~ 3391033 (+)

Expression


Co-expression Network