G105878


Basic Information

Item Value
gene id G105878
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2453160 ~ 2453377 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU119531
AGATGGTAGCCTACGCTCACCATTCAGCGTGTCATATATGAAATGTATTGATTCATATGCATGTTTAAACAGGTGAGCCTTATCTTATCCAGGTAGCAGCCGCCAGGCAGCGTAGCTCCGTTAATGATTCCCCGGCGTCAAACACTTTAATCCTGTAGCCCATTCGGACAAGAGATCATTGTTTAGTGTCAAACTCTGATTCCTGAAGTCGAGCTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119531 True 218 lncRNA 0.64 1 2453160 2453377

Neighbor

gene id symbol gene type direction distance location
LOC118944030 NA coding upstream 32539 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 275164 2166121 ~ 2177996 (+)
LOC110516539 NA coding upstream 332705 2116553 ~ 2120455 (+)
LOC110511503 LOC106605726 coding upstream 551712 1865365 ~ 1901456 (+)
slc6a3 slc6a3 coding upstream 599590 1816808 ~ 1853570 (+)
LOC118937340 NA coding downstream 524859 2978236 ~ 2978524 (+)
LOC118937337 NA coding downstream 525409 2978786 ~ 2980193 (+)
mboat1 LOC106573215 coding downstream 953810 3350582 ~ 3487129 (+)
colec10 LOC106591867 coding downstream 1597406 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 1612615 4065992 ~ 4085680 (+)
G105871 NA non-coding upstream 6520 2446092 ~ 2446640 (+)
G105853 NA non-coding upstream 42707 2409517 ~ 2410453 (+)
G105847 NA non-coding upstream 57472 2393482 ~ 2395688 (+)
G105839 NA non-coding upstream 67790 2384991 ~ 2385370 (+)
G105837 NA non-coding upstream 71113 2381345 ~ 2382047 (+)
G105880 NA non-coding downstream 2385 2455762 ~ 2456194 (+)
G105882 NA non-coding downstream 5225 2458602 ~ 2458918 (+)
G105883 NA non-coding downstream 5685 2459062 ~ 2459327 (+)
G105887 NA non-coding downstream 11067 2464444 ~ 2464698 (+)
G105888 NA non-coding downstream 11787 2465164 ~ 2466571 (+)
G105042 NA other upstream 742603 1708969 ~ 1710557 (+)
G105036 NA other upstream 752729 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 1100297 1309202 ~ 1390936 (+)
G104761 NA other upstream 1299411 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 1580645 860459 ~ 872515 (+)
G106019 NA other downstream 67339 2520716 ~ 2527972 (+)
G106122 NA other downstream 264584 2717961 ~ 2718525 (+)
G106240 NA other downstream 521446 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 753420 3006312 ~ 3391033 (+)

Expression


Co-expression Network