G105880


Basic Information

Item Value
gene id G105880
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2455762 ~ 2456194 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU119534
gaaacatagaaataccccaaaacatagaaaaacaaacatagactgcccacccaactcacgccctgaccatactaaataaatacaaaacaaaggaaataaaggtcagaacgtgacaaagggTTAGATTGTAGGGTAAGTTTTAGATTGTGGGGTAAGGGTTAGATTGTGGGGTAAGGGTTAGATtaagggttagattgtagggtaaggtttagattgtag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119534 True 219 lncRNA 0.36 2 2455762 2456194

Neighbor

gene id symbol gene type direction distance location
LOC118944030 NA coding upstream 35141 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 277766 2166121 ~ 2177996 (+)
LOC110516539 NA coding upstream 335307 2116553 ~ 2120455 (+)
LOC110511503 LOC106605726 coding upstream 554314 1865365 ~ 1901456 (+)
slc6a3 slc6a3 coding upstream 602192 1816808 ~ 1853570 (+)
LOC118937340 NA coding downstream 522042 2978236 ~ 2978524 (+)
LOC118937337 NA coding downstream 522592 2978786 ~ 2980193 (+)
mboat1 LOC106573215 coding downstream 950993 3350582 ~ 3487129 (+)
colec10 LOC106591867 coding downstream 1594589 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 1609798 4065992 ~ 4085680 (+)
G105878 NA non-coding upstream 2385 2453160 ~ 2453377 (+)
G105871 NA non-coding upstream 9122 2446092 ~ 2446640 (+)
G105853 NA non-coding upstream 45309 2409517 ~ 2410453 (+)
G105847 NA non-coding upstream 60074 2393482 ~ 2395688 (+)
G105839 NA non-coding upstream 70392 2384991 ~ 2385370 (+)
G105882 NA non-coding downstream 2408 2458602 ~ 2458918 (+)
G105883 NA non-coding downstream 2868 2459062 ~ 2459327 (+)
G105887 NA non-coding downstream 8250 2464444 ~ 2464698 (+)
G105888 NA non-coding downstream 8970 2465164 ~ 2466571 (+)
G105889 NA non-coding downstream 10629 2466823 ~ 2468498 (+)
G105042 NA other upstream 745205 1708969 ~ 1710557 (+)
G105036 NA other upstream 755331 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 1102899 1309202 ~ 1390936 (+)
G104761 NA other upstream 1302013 1153061 ~ 1153749 (+)
cmc1 cc068 other upstream 1583247 860459 ~ 872515 (+)
G106019 NA other downstream 64522 2520716 ~ 2527972 (+)
G106122 NA other downstream 261767 2717961 ~ 2718525 (+)
G106240 NA other downstream 518629 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 750603 3006312 ~ 3391033 (+)

Expression


Co-expression Network