XLOC_020795 (BX005329.2)


Basic Information

Item Value
gene id XLOC_020795
gene name BX005329.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 5745303 ~ 5749450 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040991
AAGGAATCATGCAAGGATGCAAGCTGAAGGAAAGGACAACTCTCACATCAGTGCATTACTAATTGTTTGACTTCATCATCAAGCACACCagACGGTGCGGTGGTACAGTGGATAGCTCTGTTGCCTCCCAGCAAAAATGTTtctggttcgagcatcggctgggtcagttggcatttctgtgtgaagtttgtatgttctccccgtgttggcgtgggtttcctccaggtgctccggtttcccccacaagacatgcggtacaggtgaattgggtaagctaactcagattgtgatggacctggaatgcgacaccagttactcttaagtcaagaaccaaataaagCACCAGAGTACAGATTATGGAGGTTCCTTGTAAAGATGAACCCAGGGAAGGATCGAAAGTGGAGAAGACCAGATCAAAAAAGACCACATCAAGATCTGCAGTCAGTTCAAAGGATGTTTTGcattggactgtttttttttttggctttgaccCTTGCTCGCCCCTGACCTCACTCTTGGACTGCCCTGTtggattttcagtttatttaatttaatttttatttttattttttggttctgggaaaatgctaataaatatttagttgtaaTTATTTAAGTATTATGTTTAGTTAAATATGCGATTTCTGTGTTTGTTCCGTCTACTCATACTTGTTTATCTTGTTTCTgtaattatcatttgtttatttgaccccTGCCTCGCCTTTGATCTTGTTTTTGGATTGCcctttatatatctttttaattattGGTTCTGGCTTTatggttataaaatatttg
>TCONS_00040992
ACGAGGAAGTGAAGTCAAGTCCGCCATTTCATCTTCTTCTTTATGTCggaAAAGAAAGGAATCATGCAAGGATGCAAGCTGAAGGAAAGGACAACTCTCACATCAGTGCATTACTAATTGTTTGACTTCATCATCAAGCACACCagACGGTGCGGTGGTACAGTGGATAGCTCTGTTGCCTCCCAGCAAAAATGTTtctggttcgagcatcggctgggtcagttggcatttctgtgtgaagtttgtatgttctccccgtgttggcgtgggtttcctccaggtgctccggtttcccccacaagacatgcggtacaggtgaattggctcagattgtgatggacctggaatgcgacaccagttactcttaagtcaagaaccaaataaagCACCAGAGTACAGATTATGGAGGTTCCTTGTAAAGATGAACCCAGGGAAGGATCGAAAGTGGAGAAGACCAGATCAAAAAAGACCACATCAAGATCTGCAGTCAGTTCAAAGGTACTTTCACTAATTACCAAGGTTTCAGACTATGAATTGATGGAGTAAACTTTGAGTGTCAGATCTTCCTAGCAAAAATTCTTCCCAGTGTCTTGTAGTAGAAGTGATGCAGTCAATCAAGTTTACGTTATTTCGTAAATTGCTTTccgatttaataaaaatataataaccaaacttgattaatgtaacAATTTTGATGAAAAGGGCATGTTTTACTAAAGCTTTTAGCACAAAGGCACCCCCATCTTGTAATattgctgtgtctgacgtcacggggTTGGTATGATGGAAACGTTTTTGAATgaggtatttgtatgatttatacaTAGTCTGTCTTAAAGCGTCACTAAATtgtacaggcattacaggtcaaagcaatcggttattaaatttatcaaaataaacaataaggctcttaaaacactgcttcgaaaaatgtagaaaatgtaaaaaaatatttcaaatacctcaaatgaaatgaagtcatttgttttattatttttaaaatatatttttttgtaaagtcatttgtttataattatgtaaaaaaatctaAGTACTATAAAAGTTATTTAAGCAACAAATTTGCCAGATTGTAAAGGCAGACACAGAatgagcaaacaagaaaaactgtgtaaaatgtgtaaataaaaggctacattttaaatttttacatcTTTTCATCATATACATAAAACCTTCCTAAGCTTGAAAA
>TCONS_00040993
AAACGAGGAAGTGAAGTCAAGTCCGCCATTTCATCTTCTTCTTTATGTCggaAAAGAAAGGAATCATGCAAGGATGCAAGCTGAAGGAAAGGACAACTCTCACATCAGTGCATTACTAATTGTTTGACTTCATCATCAAGCACACCagctcagattgtgatggacctggaatgcgacaccagttactcttaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092996

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040991 False 798 processed_transcript 0.40 5 5745303 5748548
TCONS_00040992 False 1213 processed_transcript 0.36 5 5746205 5749448
TCONS_00040993 True 192 processed_transcript 0.42 3 5747601 5749450

Neighbor

gene id symbol gene type direction distance location
XLOC_020792 NA coding downstream 21172 5701260 ~ 5724131 (-)
XLOC_020791 dnase1l4.1 coding downstream 62809 5667371 ~ 5682494 (-)
XLOC_020790 ccdc51 coding downstream 81949 5655756 ~ 5663354 (-)
XLOC_020789 mcm2 coding downstream 89623 5632029 ~ 5655680 (-)
XLOC_020788 NA coding downstream 114222 5624373 ~ 5631081 (-)
XLOC_020796 cers5 coding upstream 8640 5758090 ~ 5822147 (-)
XLOC_020797 si:rp71-36a1.5 coding upstream 86243 5835693 ~ 5839686 (-)
XLOC_020798 NA coding upstream 110690 5860140 ~ 5872272 (-)
XLOC_020799 BX005329.1 coding upstream 121585 5871035 ~ 5894628 (-)
XLOC_020800 si:rp71-36a1.1 coding upstream 159106 5908556 ~ 5919307 (-)
XLOC_020784 NA non-coding downstream 282188 5453243 ~ 5463115 (-)
XLOC_020781 NA non-coding downstream 429714 5312971 ~ 5315589 (-)
XLOC_020780 NA non-coding downstream 470341 5267523 ~ 5274962 (-)
XLOC_020803 NA non-coding upstream 227956 5977406 ~ 6009822 (-)
XLOC_020805 CU468041.1 non-coding upstream 294722 6044172 ~ 6046595 (-)
XLOC_020806 NA non-coding upstream 315420 6064870 ~ 6066867 (-)

Expression


Co-expression Network