G105988



Basic Information


Item Value
gene id G105988
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2462811 ~ 2463049 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU119692
aaaatctttggagggagttgaaagtccgtgttgcccagcaacagccccaaaacatcactgctctagaggagctctgcatggaggaatgggccaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaagggtatataacaaagtactgagataaacttttgttattgaccaaatacttattttccaccataatttgcaaa

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU119692 True 239 lncRNA 0.41 1 2462811 2463049

Neighbor


gene id symbol gene type direction distance location
sox4b sox4 coding downstream 13050 2446374 ~ 2449761 (-)
LOC118937335 NA coding downstream 22509 2273420 ~ 2440302 (-)
LOC118937333 NA coding downstream 158930 2302636 ~ 2303881 (-)
nrsn1 nrsn1 coding downstream 536872 1921010 ~ 1925939 (-)
zdhhc3a zdhhc3 coding downstream 730478 1709516 ~ 1732333 (-)
LOC110512766 LOC106593784 coding upstream 50661 2513710 ~ 2516419 (-)
LOC110514306 NA coding upstream 55138 2518187 ~ 2519022 (-)
LOC110511524 NA coding upstream 70753 2533802 ~ 2536162 (-)
cdkal1 cdkal coding upstream 181841 2644890 ~ 3391012 (-)
LOC118937342 e2f3 coding upstream 929597 3392063 ~ 3405112 (-)
G105964 NA non-coding downstream 48702 2413523 ~ 2414109 (-)
G105959 NA non-coding downstream 56262 2406019 ~ 2406549 (-)
G105955 NA non-coding downstream 60314 2401450 ~ 2402497 (-)
G105951 NA non-coding downstream 76094 2385595 ~ 2386717 (-)
G105990 NA non-coding upstream 1314 2464363 ~ 2464637 (-)
G105992 NA non-coding upstream 6524 2469573 ~ 2470510 (-)
G105994 NA non-coding upstream 10145 2473194 ~ 2474519 (-)
G105995 NA non-coding upstream 11643 2474692 ~ 2475026 (-)
G105996 NA non-coding upstream 12321 2475370 ~ 2477550 (-)
G105938 NA other downstream 99280 2362999 ~ 2363531 (-)
G105636 NA other downstream 342310 2118079 ~ 2120501 (-)
G105492 NA other downstream 501224 1958484 ~ 1961587 (-)
G105428 NA other downstream 544784 1917351 ~ 1918027 (-)
G105427 NA other downstream 545816 1912592 ~ 1917188 (-)
G106001 NA other upstream 19892 2482941 ~ 2483356 (-)
G106003 NA other upstream 20811 2483860 ~ 2485123 (-)
LOC110506994 carmil1 other upstream 1289512 3705036 ~ 3924570 (-)
G107456 NA other upstream 1528277 3991326 ~ 3992847 (-)
G107574 NA other upstream 1832376 4295425 ~ 4296815 (-)

Expression



Co-expression Network