G105992


Basic Information

Item Value
gene id G105992
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2469573 ~ 2470510 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU119696
caagcCTGtctgccctgcctctctctccacccagacATGCCTGGGGATTGATATAGGGCAGCAAGTCTGAGGCTCTGCTGCACTCTGTCTCTACTCGCCATCTGAAAAGGTCGGCGATGGTGATCGTCGCAGGGACATGCCAGATGGGTGGTAGCAGCAGTGCCGTGGTGGTCTAGCCAGAGCCCAAAATGAGAGGATAGGATGCCAGGATGCCGGGCCCGAGTTGATTGGCACCTGAACGacgaaagaggaggagagatgaagaggaggggaagagtaGAGTTATTTTGTCTACAAGCAGACAAGTGCCATCCAGCCAGAGGGGTCGTCTGTCAGTAGGACTGTGTGTTATTGCTTTAAGGCACCATGGATTTGGAAACCATCTGTCCACCGTCAAAAAACTGTGTTTCAAATGCTCTCTCTTCCAACCCAGAACATAGATCCACATTTATttgtgcttttctctctctctctttctctctctggtttgAATATTCCTTCATGCAGTCGCACCGGGTATGTCCTCACAGGAACACGAAGGGAAGACGACACATCGGGTATGTACTCCCAGGAACACGAAGGGAAGACGACACATCAGGTATGTCCTCCCAGGAACATAAAGGAAAGACGACACATCAGGTATGTCCTCCCAGGAACACGAAGGGAAGACGACACATCAGGTATGTCCTCCCAGGAACATGAAGGGAAGACGACGGAGTAAAATAACATTTTGGATTTACGAGAGTCCGCAGAAAAGAAGTGGAGTCGCTTCACTTTGgctttttctcccccctcttcctctctcctcccagcgtCTGTCTGGCTTGGTGCACTGCGACTGGGAAACTGTAGTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119696 True 856 lncRNA 0.38 2 2469573 2470510

Neighbor

gene id symbol gene type direction distance location
sox4b sox4 coding downstream 19812 2446374 ~ 2449761 (-)
LOC118937335 NA coding downstream 29271 2273420 ~ 2440302 (-)
LOC118937333 NA coding downstream 165692 2302636 ~ 2303881 (-)
nrsn1 nrsn1 coding downstream 543634 1921010 ~ 1925939 (-)
zdhhc3a zdhhc3 coding downstream 737240 1709516 ~ 1732333 (-)
LOC110512766 LOC106593784 coding upstream 43200 2513710 ~ 2516419 (-)
LOC110514306 NA coding upstream 47677 2518187 ~ 2519022 (-)
LOC110511524 NA coding upstream 63292 2533802 ~ 2536162 (-)
cdkal1 cdkal coding upstream 174380 2644890 ~ 3391012 (-)
LOC118937342 e2f3 coding upstream 922136 3392063 ~ 3405112 (-)
G105990 NA non-coding downstream 4936 2464363 ~ 2464637 (-)
G105988 NA non-coding downstream 6524 2462811 ~ 2463049 (-)
G105964 NA non-coding downstream 55464 2413523 ~ 2414109 (-)
G105959 NA non-coding downstream 63024 2406019 ~ 2406549 (-)
G105955 NA non-coding downstream 67076 2401450 ~ 2402497 (-)
G105994 NA non-coding upstream 2684 2473194 ~ 2474519 (-)
G105995 NA non-coding upstream 4182 2474692 ~ 2475026 (-)
G105996 NA non-coding upstream 4860 2475370 ~ 2477550 (-)
G105997 NA non-coding upstream 8686 2479196 ~ 2480550 (-)
G106000 NA non-coding upstream 11759 2482269 ~ 2482478 (-)
G105938 NA other downstream 106042 2362999 ~ 2363531 (-)
G105636 NA other downstream 349072 2118079 ~ 2120501 (-)
G105492 NA other downstream 507986 1958484 ~ 1961587 (-)
G105428 NA other downstream 551546 1917351 ~ 1918027 (-)
G105427 NA other downstream 552578 1912592 ~ 1917188 (-)
G106001 NA other upstream 12431 2482941 ~ 2483356 (-)
G106003 NA other upstream 13350 2483860 ~ 2485123 (-)
LOC110506994 carmil1 other upstream 1282051 3705036 ~ 3924570 (-)
G107456 NA other upstream 1520816 3991326 ~ 3992847 (-)
G107574 NA other upstream 1824915 4295425 ~ 4296815 (-)

Expression


Co-expression Network