G105996


Basic Information

Item Value
gene id G105996
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2475370 ~ 2477550 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU119702
TTATTTACATTAAAACACACAATCTACAGATTGATTTGTATAAACAGCACATGTGCTGTTGTTAAATAGGGAGCATTTACATTAGAAGTCTTGACATTAAAATCAAACCTATTCTCTGTTTCTGTAAAAAACTAAAACAACTGAGAGATGGgtctggagaaatgcaaccactctcaaattcatagacagagagCGTTGGATgaccaggactgaccatccatcatATCAACATGACAGTTTCAACCATGTTTTGACACTGTACAgtgttttaaaaaacaaaacaacaacatttacattgtttacaaacattggcgtAACAACAAGCTTGAATTTGTTTTGTTCTAATGGGaaacaacagttgaactaaactcataAGGCATTTACAAGTTTATATTATTCAAGAGAGATATAAATACTGTATATCAGCAGTCCTACTACAGGccctggagagtgagagagggataaactgatcctagaccagcactcctACTACAGagtgagagaaggataaactgatcctagaccagcactcctactacagagtgagagagggataaactgatcctagaccagcactcctactacagagtgagagagggataaactgatcatagatcagcactcctactacagagtgagagagggataaactgatcctagaacagcactcCTACTACAGAATGAGAGAGGTATGTAAACAAGCTATCCATTATGTAGAGGAATTCCAGTATAAAATGAAGACATCGATCAAACTAATGAGAAGGGAACCTATCAACGCTCatttaaagacacacacacacagctggtttgTTTCCCTTCTGAACCAATGAGGATGTGATGGGAACAAAGCAACACTCATTTAAAGATGGAAGGAGATTtaattttatacctttatttaactaggcaagtcagttaagaataaactCTTCTTTTCAATGacatcctaggaacagtggggtttaactgccttgtttaggggcacaacggcagatttttaccttgtcagctcagggttttgatcgagcaacctttcagttactagtccaacactctaaccactaggctacctgcctctaaccactaggctacctgcctctaaccactaggctacctgcctctaaccactaggctacctgcctgtaaccactaggctacctgcctctaaccactaggctacctgcctctcaccactaggctacctgcctctaaccacttggctacctgcctctaaccacttggctacctgcctctaaccacttggctacctgcctctaaccacttggctaccagcctctaaccactaggctacctgcctctaaccactaggctacctgcctctaaccactaggctacctgcctgtaaccactaggctacctgcctctaaccactaggctacctgcctctaaccactaggctacctgcctctaaccactaggctacctgcctctaaccactaggctacctgccgtcccaaaTATGAGGGGAGATGTGAGGAGGATAATActggagttgaaagtccgtgttgcccagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaag
>TU119701
TTATTTACATTAAAACACACAATCTACAGATTGATTTGTATAAACAGCACATGTGCTGTTGTTAAATAGGGAGCATTTACATTAGAAGTCTTGACATTAAAATCAAACCTATTCTCTGTTTCTGTAAAAAACTAAAACAACTGAGAGATGGgtctggagaaatgcaaccactctcaaattcatagacagagagCGTTGGATgaccaggactgaccatccatcatATCAACATGACAGTTTCAACCATGTTTTGACACTGTACAgtgttttaaaaaacaaaacaacaacatttacattgtttacaaacattggcgtAACAACAAGCTTGAATTTGTTTTGTTCTAATGGGaaacaacagttgaactaaactcataAGGCATTTACAAGTTTATATTATTCAAGAGAGATATAAATACTGTATATCAGCAGTCCTACTACAGGccctggagagtgagagagggataaactgatcctagaccagcactcctACTACAGGCCCTGGAGAGAGggataaactgatcctagatcagcactcctactacaggccctggagagtgagagagggataaactgatcctagaccagcactccCACTACAGGCCCTGGAGAGAGggataaactgatcctagatcagcactcctactacaggccctggagagtgagagagggataaactgatcctagaccagcactcctactacagagtgagagagggataaactgatcctagatcagcactcctactacaggccctggagagtgagagagggataaactgatcctagatcagcactcctactacagGCCctggagagtgagagaaggataaactgatcctagaccagcactcctactacagagtgagagagggataaactgatcctagaccagcactcctactacagagtgagagagggataaactgatcatagatcagcactcctactacagagtgagagagggataaactgatcctagaacagcactcCTACTACAGAATGAGAGAGGTATGTAAACAAGCTATCCATTATGTAGAGGAATTCCAGTATAAAATGAAGACATCGATCAAACTAATGAGAAGGGAACC
>TU119704
TTATTTACATTAAAACACACAATCTACAGATTGATTTGTATAAACAGCACATGTGCTGTTGTTAAATAGGGAGCATTTACATTAGAAGTCTTGACATTAAAATCAAACCTATTCTCTGTTTCTGTAAAAAACTAAAACAACTGAGAGATGGgtctggagaaatgcaaccactctcaaattcatagacagagagCGTTGGATgaccaggactgaccatccatcatATCAACATGACAGTTTCAACCATGTTTTGACACTGTACAgtgttttaaaaaacaaaacaacaacatttacattgtttacaaacattggcgtAACAACAAGCTTGAATTTGTTTTGTTCTAATGGGaaacaacagttgaactaaactcataAGGCATTTACAAGTTTATATTATTCAAGAGAGATATAAATACTGTATATCAGCAGTCCTACTACAGGccctggagagtgagagagggataaactgatcctagaccagcactcctACTACAGGCCCTGGAGAGtgagagagggataaactgatcctagatcagcactcctactacaGGCCctggagagtgagagaaggataaactgatcctagaccagcactcctactacagagtgagagagggataaactgatcctagaccagcactcctactacagagtgagagagggataaactgatcatagatcagcactcctactacagagtgagagagggataaactgatcctagaacagcactcCTACTACAGAATGAGAGAGGTATGTAAACAAGCTATCCATTATGTAGAGGAATTCCAGTATAAAATGAAGACATCGATCAAACTAATGAGAAGGGAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119702 False 1661 lncRNA 0.48 2 2475370 2477550
TU119701 False 1087 lncRNA 0.47 2 2476262 2477550
TU119704 True 833 lncRNA 0.40 2 2476262 2477550

Neighbor

gene id symbol gene type direction distance location
sox4b sox4 coding downstream 25609 2446374 ~ 2449761 (-)
LOC118937335 NA coding downstream 35068 2273420 ~ 2440302 (-)
LOC118937333 NA coding downstream 171489 2302636 ~ 2303881 (-)
nrsn1 nrsn1 coding downstream 549431 1921010 ~ 1925939 (-)
zdhhc3a zdhhc3 coding downstream 743037 1709516 ~ 1732333 (-)
LOC110512766 LOC106593784 coding upstream 36160 2513710 ~ 2516419 (-)
LOC110514306 NA coding upstream 40637 2518187 ~ 2519022 (-)
LOC110511524 NA coding upstream 56252 2533802 ~ 2536162 (-)
cdkal1 cdkal coding upstream 167340 2644890 ~ 3391012 (-)
LOC118937342 e2f3 coding upstream 915096 3392063 ~ 3405112 (-)
G105995 NA non-coding downstream 344 2474692 ~ 2475026 (-)
G105994 NA non-coding downstream 851 2473194 ~ 2474519 (-)
G105992 NA non-coding downstream 4860 2469573 ~ 2470510 (-)
G105990 NA non-coding downstream 10733 2464363 ~ 2464637 (-)
G105988 NA non-coding downstream 12321 2462811 ~ 2463049 (-)
G105997 NA non-coding upstream 1646 2479196 ~ 2480550 (-)
G106000 NA non-coding upstream 4719 2482269 ~ 2482478 (-)
G106005 NA non-coding upstream 7648 2485198 ~ 2485622 (-)
G106043 NA non-coding upstream 75310 2552860 ~ 2553853 (-)
G106044 NA non-coding upstream 76447 2553997 ~ 2554368 (-)
G105938 NA other downstream 111839 2362999 ~ 2363531 (-)
G105636 NA other downstream 354869 2118079 ~ 2120501 (-)
G105492 NA other downstream 513783 1958484 ~ 1961587 (-)
G105428 NA other downstream 557343 1917351 ~ 1918027 (-)
G105427 NA other downstream 558375 1912592 ~ 1917188 (-)
G106001 NA other upstream 5391 2482941 ~ 2483356 (-)
G106003 NA other upstream 6310 2483860 ~ 2485123 (-)
LOC110506994 carmil1 other upstream 1275011 3705036 ~ 3924570 (-)
G107456 NA other upstream 1513776 3991326 ~ 3992847 (-)
G107574 NA other upstream 1817875 4295425 ~ 4296815 (-)

Expression


Co-expression Network