G106023 (LOC106593068)


Basic Information

Item Value
gene id G106023
gene name LOC106593068
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 2539957 ~ 2542574 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU119732
GCGCTTCCAATTGGATTCCATCGACAAGCTGTCTTCAAACTTGATGGGAAAGCCCATCTTAACCAAGTTGACATAGTCGTTTCCTGCGATGGCAGCGAAGACTGGGAGAAGCTGTCTGTTGATGTTGACTTGTCTGCAGAAGCTTGTTGTGGTGTACCGCTTGCAGGGGATGTAATTTTGAGGACTCCAGCCTTGCACTGACGCGTTCTGCCACTGAAAATGGGACATGGGAAGAAATCCAGCCTGGATGGCAAAAATATAAAAGTCACTGTCATTGGACAGGACCGGACACTTCCACCTTTGAGCCAAGGAGGCTATTTCTTGGTCTGCTTCAAAGATGCAATGCGCGAATGGCACCTTCAGGCTGGAGAGGACCTGTTTGAAGACTTGTTTGATGAAGACTGGCAGTAAACCTCTCTCCCGAAGCCCCATGGACAAGTTCTTGGCTTGGTTGATCCTTGATTGAGCTCGTTGTCGGAGAGTTTCAAACTTTTTATCGGAAAAGTCAGAGCCTCCGTCTATAATCACATAAGGTTCAATGCCACAATCTCTCAGAGCCTTAAAGAACTTGCAGACCTGGTCCTCAAATACATCATAATCCCCTGCATGCTGCTGATCCACACATGAGGTCAAATAAAGAGAGTGGTAGATATTACAACCATCTATGACTACCTTGCTGTTTCTGAAGCGATAATCTGTTAAAATCGCTCCATGATCACCTATAAAGCTGGTTAAACCCAAGACACCCATGATGTGATCTATCTAGGATGTGATGTCTTTCTAAGTGAAGAGTTTCAGTCACAGGACTATTTATAGGATCATTACAATGGATGAGTTTCCTTTTAGTTAAGTTTCCCTTTCAATACGTCATATGTCCCTCATGATCTCTTTATGGTCACTTCACCTGCTGCTGAGTAGATCTTTATGGTCACTTCACCTGCTGCTGAGTAGATCTTTATGGTCACTTCACCTGCTGCTGAGTAGATCTTTATGGTCACTTCACCTGATGCTGAGTAGATATTTATGGTCACTTCACCTGATGCTGAGTAGATCTTTATGGTCACTTCACCTGCTGCTGAGTAGATCTTTATGGTCACTTCACTTTAAGGTTTATTAACTTAAAACGCAGGAGGACATGGAGTGAAGCATTTCAGTCACATGACTAtctacatcatcatcattacaATGGATAGTTTTCTCTTTTGTTAAGTTTCCTTTTCCCGAAAACCTAACAGGCAAATGCCCTGGAGGAGGAATGTATTATGAAAACAGTGCTCATCACACATGATCACTTAGACACTGCCAGGTAGCTTGTCTAGTTTCCTGCTCCATTGTATTTGTGAATGAAACCTCCATAACTGATAAACTGCTGCACACTATTTCTATAAACTGATTGGGTTGGTTGGCAAAGGCCTGTCTTTAGTATAGGTTGCTGATGGTGTTGTGGGCTACTGTGATGGTGGTGTTGTGGGCTACtctggtggtggtgttgtgggctactgtgatggtggtgttgtgggctaccatggtggtggaGTAGTGGGTTACCATGGTGGTGGAGTAGTGGgctactgtggtggtggtggtggtgtgggctacaatggcggtggtggtgtgggctaccattGTGGGGGTGTCGTGGTctactgtggtggtggtgatgttggtggtgtgggctaccatgaTGGTGGGGctgtgggctaccatggtggtggagttgtgggctaccatggtggtggaGTTGTGGTCtactgtggtggtggtgctgtgggCTACCATGATGGTGGAGttgtgggctaccatggtggtggagttgtgggctaccatggtggtgtTGTCGTGAGCTACCatggtggtggaggtgtgggctaccatggtggtggaGTTGTGGGCTACCATGATGGTGGAGTTGTGGTCtactgtggtggtggtgctgtgagCTACTATGTTTGTGTTGtagtgggctaccatggtggtggaGATGTGGGTTaccgtggtggtggtgttggctaccatgttggtggtggtggtgctggtgatGTGGGTTACCATgctggtgtgagagagaggagagagagagcatacttaaattctcacaggacactggataagacaggagaaatactccaggtataacagactgaccctagccccctgacacgtaaactattgcagcataaatactggaggctgaaacaggaggggtcgggagacactatgGCCCCGTTCGACgataccccggacagggccaaacaggaaggatataaccccacccactttgccaaagcacagcccccacaccactagagggatatcttcaaccaccaacttaccatcctgagacaaggccgagtatagcccacaaacatCTTCCATACGGCACGAACCCGAGAAGGGTGCGCCAACCAGGACAGGaaaatcac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119732 True 2423 lncRNA 0.48 3 2539957 2542574

Neighbor

gene id symbol gene type direction distance location
LOC118944030 NA coding upstream 119336 2418186 ~ 2420621 (+)
LOC118944029 NA coding upstream 361961 2166121 ~ 2177996 (+)
LOC110516539 NA coding upstream 419502 2116553 ~ 2120455 (+)
LOC110511503 LOC106605726 coding upstream 638509 1865365 ~ 1901456 (+)
slc6a3 slc6a3 coding upstream 686387 1816808 ~ 1853570 (+)
LOC118937340 NA coding downstream 435662 2978236 ~ 2978524 (+)
LOC118937337 NA coding downstream 436212 2978786 ~ 2980193 (+)
mboat1 LOC106573215 coding downstream 864613 3350582 ~ 3487129 (+)
colec10 LOC106591867 coding downstream 1508209 4050783 ~ 4065607 (+)
mal2 mal2 coding downstream 1523418 4065992 ~ 4085680 (+)
G106015 NA non-coding upstream 3075 2514924 ~ 2536882 (+)
G106006 NA non-coding upstream 53527 2486228 ~ 2486430 (+)
G106004 NA non-coding upstream 54340 2485197 ~ 2485617 (+)
G106002 NA non-coding upstream 54811 2484797 ~ 2485146 (+)
G105889 NA non-coding upstream 71459 2466823 ~ 2468498 (+)
G106040 NA non-coding downstream 7281 2549855 ~ 2550138 (+)
G106045 NA non-coding downstream 12138 2554712 ~ 2555100 (+)
G106053 NA non-coding downstream 21716 2564290 ~ 2564535 (+)
G106055 NA non-coding downstream 22905 2565479 ~ 2565683 (+)
G106056 NA non-coding downstream 25488 2568062 ~ 2568266 (+)
G106019 NA other upstream 11985 2520716 ~ 2527972 (+)
G105042 NA other upstream 829400 1708969 ~ 1710557 (+)
G105036 NA other upstream 839526 1699073 ~ 1700431 (+)
tgfbr2b LOC106606173 other upstream 1187094 1309202 ~ 1390936 (+)
G104761 NA other upstream 1386208 1153061 ~ 1153749 (+)
G106122 NA other downstream 175387 2717961 ~ 2718525 (+)
G106240 NA other downstream 432249 2974823 ~ 3039475 (+)
G106253 cdkal other downstream 664223 3006312 ~ 3391033 (+)
G106575 NA other downstream 1096860 3639434 ~ 3800352 (+)

Expression


Co-expression Network